PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.O00384.1.p | ||||||||
Common Name | LOC105960798, MIMGU_mgv1a022433mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB | ||||||||
Protein Properties | Length: 218aa MW: 25192.3 Da PI: 8.1917 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.3 | 2e-19 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed+ll+++v+q+G g+W++++++ g++R++k+c++rw +yl Migut.O00384.1.p 13 KGPWTPVEDKLLIEYVTQFGEGRWSSVSKCTGLNRSGKSCRLRWVNYL 60 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49 | 1.4e-15 | 66 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g T++E+ ++++++ +G++ W+tIar+++ gRt++++k++w+++ Migut.O00384.1.p 66 KGQLTPQEQGIIIELHSIWGNK-WSTIARYLP-GRTDNEIKNYWRTH 110 5778******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.853 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.26E-31 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-16 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-17 | 13 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-23 | 14 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.21E-11 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 22.797 | 61 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 8.4E-13 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-13 | 66 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-23 | 68 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.61E-9 | 70 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MEKYGISEQG WRKGPWTPVE DKLLIEYVTQ FGEGRWSSVS KCTGLNRSGK SCRLRWVNYL 60 RPGLKKGQLT PQEQGIIIEL HSIWGNKWST IARYLPGRTD NEIKNYWRTH FKKRPSSSKP 120 FSEVIKKRNQ FNKQKKENNV DIESISPQLV AENDSKQEEV GPDCTGADVE EINDKMLPVF 180 NQDYYHGLSW SEFSTIPMDC CLWDGLWNFG DSTTNFN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-26 | 13 | 114 | 7 | 107 | B-MYB |
1h8a_C | 8e-26 | 13 | 114 | 27 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00388 | DAP | Transfer from AT3G30210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.O00384.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012840463.1 | 1e-161 | PREDICTED: transcription factor MYB48-like | ||||
Swissprot | Q9LX82 | 2e-49 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A022R4Q5 | 1e-160 | A0A022R4Q5_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30210.1 | 4e-64 | myb domain protein 121 |
Link Out ? help Back to Top | |
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Phytozome | Migut.O00384.1.p |
Entrez Gene | 105960798 |
Publications ? help Back to Top | |||
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