PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.O00369.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | ERF | ||||||||
Protein Properties | Length: 210aa MW: 23242.4 Da PI: 9.1308 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.8 | 1.1e-17 | 117 | 167 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp+ r++lg++ t +Aa+a++ a+ +++g Migut.O00369.1.p 117 RYRGVRRRP-WGRYAAEIRDPTRK--GSRVWLGTYETDVDAARAYDCAAFEMRG 167 7********.**********8542..4**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.25E-22 | 117 | 176 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.5E-31 | 117 | 176 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.342 | 117 | 175 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.3E-13 | 117 | 167 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-33 | 117 | 181 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-12 | 118 | 129 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.04E-22 | 125 | 177 | No hit | No description |
PRINTS | PR00367 | 1.2E-12 | 157 | 177 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MMTTISHNNI EALKLELLTR YLLEDLTSPD TKPIWSPDSP SSGSDFCSEP SQPDSPISRY 60 FSSSPDLFEF ETKPEIINLS PHPASMKPVK PELPVCSDDL MITGSGISTS SVVARRRYRG 120 VRRRPWGRYA AEIRDPTRKG SRVWLGTYET DVDAARAYDC AAFEMRGTKA ILNFPADAGK 180 YAPPVAVAGR KMGRGRSYKV VQPSCIRNH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-25 | 116 | 175 | 4 | 63 | ATERF1 |
3gcc_A | 2e-25 | 116 | 175 | 4 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.O00369.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012847846.1 | 1e-154 | PREDICTED: ethylene-responsive transcription factor ERF107-like | ||||
TrEMBL | A0A022QLW7 | 1e-128 | A0A022QLW7_ERYGU; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 1e-28 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.O00369.1.p |