PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.O00344.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | E2F/DP | ||||||||
Protein Properties | Length: 236aa MW: 26460.3 Da PI: 10.0123 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 72.7 | 4e-23 | 32 | 113 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse......dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 rkeksL+ lt++f+kl+ +++ + ++l+++ak L+ + +++k+RR+YDi+NVL++++ iek ++k+++rw g Migut.O00344.2.p 32 RKEKSLGFLTHNFVKLFLCTDMDLISLEDAAKLLLGDgkhtsmTTRTKVRRLYDIANVLSSMKFIEKihhpeTRKPAFRWLG 113 79*****************************************999**********************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.8E-21 | 28 | 115 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.0E-28 | 32 | 113 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 7.8E-18 | 33 | 113 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.18E-11 | 34 | 114 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MSSDINCLSQ NDKSDTSSVL KSAMASKSGE NRKEKSLGFL THNFVKLFLC TDMDLISLED 60 AAKLLLGDGK HTSMTTRTKV RRLYDIANVL SSMKFIEKIH HPETRKPAFR WLGLNGKPDN 120 GIVDSKKRIF GTDLTNTAKR FKVDEDGLQI LKPVNLMRVK NETENENDRT TTMGAKSYLF 180 GPFAPANVPQ VGVSNDYKGK QVVDWESLAS TYRPKYHNQG IFLKLLISSY QNIFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 1e-13 | 26 | 105 | 146 | 228 | Transcription factor E2F8 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.O00344.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012831165.1 | 1e-157 | PREDICTED: E2F transcription factor-like E2FE isoform X2 | ||||
TrEMBL | A0A022RPY3 | 1e-156 | A0A022RPY3_ERYGU; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.1 | 7e-51 | DP-E2F-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Migut.O00344.2.p |