PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.O00344.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family E2F/DP
Protein Properties Length: 242aa    MW: 27075.9 Da    PI: 10.0123
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.O00344.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP68.29.9e-2232119171
           E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse............dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                       rkeksL+ lt++f+kl+ +++ + ++l+++ak L+ +            +   k+RR+YDi+NVL++++ iek     ++k+++rw g
  Migut.O00344.1.p  32 RKEKSLGFLTHNFVKLFLCTDMDLISLEDAAKLLLGDgkhtsmttrisfNSPAKVRRLYDIANVLSSMKFIEKihhpeTRKPAFRWLG 119
                       79***********************************************88889********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.2E-2128121IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013729.2E-2632119IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.9E-1633119IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.22E-1134120IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MSSDINCLSQ NDKSDTSSVL KSAMASKSGE NRKEKSLGFL THNFVKLFLC TDMDLISLED  60
AAKLLLGDGK HTSMTTRISF NSPAKVRRLY DIANVLSSMK FIEKIHHPET RKPAFRWLGL  120
NGKPDNGIVD SKKRIFGTDL TNTAKRFKVD EDGLQILKPV NLMRVKNETE NENDRTTTMG  180
AKSYLFGPFA PANVPQVGVS NDYKGKQVVD WESLASTYRP KYHNQGIFLK LLISSYQNIF  240
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A5e-1326111146228Transcription factor E2F8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.O00344.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831164.11e-162PREDICTED: E2F transcription factor-like E2FE isoform X1
TrEMBLA0A022RPY31e-152A0A022RPY3_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25222457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.16e-48DP-E2F-like 1