PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.O00138.1.p | ||||||||
Common Name | LOC105974961, MIMGU_mgv1a023370mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | LBD | ||||||||
Protein Properties | Length: 181aa MW: 19587 Da PI: 8.2084 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 138.2 | 2.8e-43 | 11 | 109 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrrkC+++C+++ yfp e+p+kfanvhk+FGasnv kll++l +++r+da++sl+yeAear+rdPvyG+vg i+ lq+q+++l++e Migut.O00138.1.p 11 PCAACKFLRRKCTAGCIFSGYFPPEEPQKFANVHKIFGASNVAKLLNDLLPHQRDDAVQSLAYEAEARVRDPVYGCVGAISFLQRQVDRLQKE 103 7******************************************************************************************** PP DUF260 94 lallke 99 l+++++ Migut.O00138.1.p 104 LDAANA 109 *99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.389 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.0E-42 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MASSSSTYNP PCAACKFLRR KCTAGCIFSG YFPPEEPQKF ANVHKIFGAS NVAKLLNDLL 60 PHQRDDAVQS LAYEAEARVR DPVYGCVGAI SFLQRQVDRL QKELDAANAD LIRLAAASSP 120 SVHMPPPPPH QRPAEFGRRF GNDGGGGGRF YQTPGYQITY NASPWADIYN PHGGGFDGNI 180 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-59 | 11 | 115 | 11 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-59 | 11 | 115 | 11 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.O00138.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012855577.1 | 1e-133 | PREDICTED: LOB domain-containing protein 25 isoform X1 | ||||
Swissprot | Q9FML4 | 9e-67 | LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES | ||||
TrEMBL | A0A022Q6M1 | 1e-131 | A0A022Q6M1_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.4 | 5e-63 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.O00138.1.p |
Entrez Gene | 105974961 |
Publications ? help Back to Top | |||
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