PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.N03328.1.p | ||||||||
Common Name | LOC105972895, MIMGU_mgv1a004523mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 523aa MW: 57262.4 Da PI: 5.7512 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 79.1 | 4.5e-25 | 121 | 223 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f k+ltpsd+++ g +++p+++a+ + ++ + ltl+d++++ We+++iyr++++r++lt+GW++Fv+a++L +gD+ vF++++ Migut.N03328.1.p 121 FSKILTPSDANNGGGFSVPRSCADMIfppldfaADPPVQ--NLTLKDTNNNAWEFRHIYRGTPRRHLLTTGWSKFVNAKRLVAGDSAVFMRKQ 211 88*********************999*****97666666..6************************************************766 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 s+ el+++v+r+ Migut.N03328.1.p 212 -STDELYIGVRRA 223 .88889****997 PP | |||||||
2 | Auxin_resp | 77.9 | 2.6e-26 | 241 | 323 | 2 | 83 |
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 +++a ++++Fev+Y+P ++++Fvvk+ekv +a+++++++GmR+kma+e +dss+ ++ sGt+++vs+ ++ W +S+W +L+ Migut.N03328.1.p 241 IENAVKGMAFEVLYCPTFGSPDFVVKAEKVCEATRTNWTAGMRVKMAVEADDSSRLTWsSGTIAAVSCPNTGPWCGSPWGLLQ 323 66788999***********************************************************************9886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.75E-30 | 112 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.0E-33 | 118 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.51E-23 | 120 | 222 | No hit | No description |
Pfam | PF02362 | 6.6E-23 | 121 | 223 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.5E-20 | 121 | 224 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.155 | 121 | 224 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.2E-21 | 241 | 323 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 523 aa Download sequence Send to blast |
MSNFSSSSSA VATASEVDAS IWRAVAGACV QIPPPNSFVY YFPQGHLEHC SFSTAFINSF 60 NFALGRPFIY CQVLSIRFFS NHLSDQVFVK ITLQPINTYG PCPVSNAGGD RENNQGDVVL 120 FSKILTPSDA NNGGGFSVPR SCADMIFPPL DFAADPPVQN LTLKDTNNNA WEFRHIYRGT 180 PRRHLLTTGW SKFVNAKRLV AGDSAVFMRK QSTDELYIGV RRAQRFGGIE GQNGGEALRA 240 IENAVKGMAF EVLYCPTFGS PDFVVKAEKV CEATRTNWTA GMRVKMAVEA DDSSRLTWSS 300 GTIAAVSCPN TGPWCGSPWG LLQMTWDEPE SMRNVNRVSP WQVEYLDPTL MLNPNFPPLK 360 KLKLLSYSDM LLSAGEGEIP FPTAEFNSPL FNASIQGARL DPVYIPTTTT TNSQVSKEIP 420 DKNEGEPERE TVSTVLSIGS SYSDKDNVSP PSQSSVASAT KLVRENSFQL FGQIIQMPQP 480 GEDGACCSNA VSEENPVIDH QLPSPSARVQ QQQRFRRPSD KS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-65 | 17 | 344 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.N03328.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012853330.1 | 0.0 | PREDICTED: auxin response factor 17 | ||||
TrEMBL | A0A022Q7N3 | 0.0 | A0A022Q7N3_ERYGU; Auxin response factor |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9560 | 19 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G77850.1 | 1e-104 | auxin response factor 17 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.N03328.1.p |
Entrez Gene | 105972895 |