PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N03205.1.p
Common NameLOC105958956, MIMGU_mgv1a024477mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ERF
Protein Properties Length: 279aa    MW: 30143.1 Da    PI: 5.6181
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N03205.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.7e-20102151255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  Migut.N03205.1.p 102 KYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFSTAEAAARAYDEAALRFRG 151
                       8********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.3E-33101160IPR001471AP2/ERF domain
PfamPF008471.1E-13102151IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-22102160IPR016177DNA-binding domain
SMARTSM003801.3E-38102165IPR001471AP2/ERF domain
PROSITE profilePS5103225.501102159IPR001471AP2/ERF domain
PRINTSPR003671.4E-11103114IPR001471AP2/ERF domain
CDDcd000181.21E-17108161No hitNo description
PRINTSPR003671.4E-11125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MQEQPDYLLS AVVAGNTLSG YYAESPEMSA MVAALTHVVS GQPINGDQIS HTYSPPSAYS  60
SSSVISELET ATTDIAAVEQ REVAAAAATS EEEITGERRR RKYRGVRQRP WGKWAAEIRD  120
PHKAARVWLG TFSTAEAAAR AYDEAALRFR GSRAKLNFPE NVRISPPPPP APSPPSFYQP  180
TFYDSSILAA GGGGLYSHQL NNNFSSEYSP AINFSSGQHQ PPFNISSSSF SYPLLFSSGQ  240
TIDFRPREND DQLAQGSGAA LDFPTPPWYS GHFPPSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-23101162466ATERF1
3gcc_A2e-23101162466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N03205.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012838409.10.0PREDICTED: ethylene-responsive transcription factor ERF110
SwissprotQ9FH541e-34EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A022R8Z10.0A0A022R8Z1_ERYGU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.14e-21related to AP2 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]