PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N03139.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family BBR-BPC
Protein Properties Length: 368aa    MW: 41344.6 Da    PI: 10.321
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N03139.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind338.22.1e-10313431294
         GAGA_bind   1 mdddgsre..rnkg.yye....paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalll 86 
                       mdd+g+re  r+k+ + +    +++s+k     q+m  +aerda+i+ernla+sekk a+aerdma lqrd+a+aern+a++erdn++++l++
  Migut.N03139.1.p   1 MDDSGHREngRHKPpQGQwlmqQQPSMK-----QIMGFMAERDAAIQERNLAISEKKTALAERDMAILQRDSAIAERNNAIMERDNAIATLQY 88 
                       9999998878888732223332335555.....************************************************************ PP

         GAGA_bind  87 vensla......salpvgvqvlsgtksidslqqlse............pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpke 161
                       +en+++      s +p+g+q+ +g+k++++ qq+++            +++++s+++ ++++ +++++++++            + + ++p +
  Migut.N03139.1.p  89 RENAINssnnnmSPCPPGCQIPRGVKHMHHPQQHQQqqqqhihhhhhqSHMAESPYNNNNNSSNNNNNTRDNM-----------QMSDTVPIS 170
                       ***998888988899***************9995552333444444443333333333322222222222222...........223334444 PP

         GAGA_bind 162 kkakkkkkksekskkkvkkesader........................................skaekksidlvlngvslDestlPvPvCs 214
                       + a +++k++++++ k++k+ a                                            k ++k++dl+ln+v++Dest+PvPvCs
  Migut.N03139.1.p 171 PVAPEPTKTRRAKRAKEAKPAATAAprkasknskrvkreednnlndlnnlnkavfgkshdmelggPKLDWKDQDLGLNQVAFDESTMPVPVCS 263
                       4444444444444333333333211234555555666666778899*********************************************** PP

         GAGA_bind 215 CtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGt 294
                       CtG lr CYkWGnGGWqS+CCtt++S+yPLP+++++r+aR++grKmS++af+kl+++LaaeG+dlsnpvDLkdhWAkHGt
  Migut.N03139.1.p 264 CTGFLRPCYKWGNGGWQSSCCTTNLSMYPLPAVPNKRHARVGGRKMSGSAFNKLISRLAAEGHDLSNPVDLKDHWAKHGT 343
                       *******************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062175.4E-911343IPR010409GAGA-binding transcriptional activator
SMARTSM012268.8E-1421345IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDDSGHRENG RHKPPQGQWL MQQQPSMKQI MGFMAERDAA IQERNLAISE KKTALAERDM  60
AILQRDSAIA ERNNAIMERD NAIATLQYRE NAINSSNNNM SPCPPGCQIP RGVKHMHHPQ  120
QHQQQQQQHI HHHHHQSHMA ESPYNNNNNS SNNNNNTRDN MQMSDTVPIS PVAPEPTKTR  180
RAKRAKEAKP AATAAPRKAS KNSKRVKREE DNNLNDLNNL NKAVFGKSHD MELGGPKLDW  240
KDQDLGLNQV AFDESTMPVP VCSCTGFLRP CYKWGNGGWQ SSCCTTNLSM YPLPAVPNKR  300
HARVGGRKMS GSAFNKLISR LAAEGHDLSN PVDLKDHWAK HGTIATSLSN RKKKKKIHHL  360
MLMQDKK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N03139.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083484.11e-172protein BASIC PENTACYSTEINE6
RefseqXP_011083486.11e-172protein BASIC PENTACYSTEINE6
RefseqXP_011083487.11e-172protein BASIC PENTACYSTEINE6
RefseqXP_011083489.11e-172protein BASIC PENTACYSTEINE6
RefseqXP_011083490.11e-172protein BASIC PENTACYSTEINE6
RefseqXP_011083491.11e-172protein BASIC PENTACYSTEINE6
RefseqXP_011083494.11e-172protein BASIC PENTACYSTEINE6
RefseqXP_020551029.11e-172protein BASIC PENTACYSTEINE6
RefseqXP_020551030.11e-172protein BASIC PENTACYSTEINE6
RefseqXP_020551031.11e-172protein BASIC PENTACYSTEINE6
RefseqXP_020551032.11e-172protein BASIC PENTACYSTEINE6
RefseqXP_020551033.11e-172protein BASIC PENTACYSTEINE6
RefseqXP_020551034.11e-172protein BASIC PENTACYSTEINE6
SwissprotQ8L9991e-139BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A022R8S90.0A0A022R8S9_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53532338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-121basic pentacysteine 6