PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.N03107.2.p

Common Name

LOC105959533, MIMGU_mgv1a013539mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

FAR1

Protein Properties

Length: 218aa MW: 24708 Da PI: 9.0819

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.N03107.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.3	2.9e-19	51	136	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y++YA ++GF +r+ +s+ks+r+g+i++r + C + ++++ + +++ ++ r gC+a+l +k+e+ g+w+v k++ +HnH+l+ Migut.N03107.2.p 51 YYDNYAGRAGFLTRVLSSRKSERDGSIISRGLGCRNILNAQKACNI---SNEVGEKRRDGCTAMLLIKRENGGRWVVRKFVRDHNHPLV 136 8*******************************887666665444...6778888999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.2E-17	51	136	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MDMEDALDRG NGMIEASVVG EVTSYQADIN IENTEPYEGM TFESDSAARA YYDNYAGRAG 60 FLTRVLSSRK SERDGSIISR GLGCRNILNA QKACNISNEV GEKRRDGCTA MLLIKRENGG 120 RWVVRKFVRD HNHPLVASLP KRRPTYDEKD KRIQELTAEL RIKKRLSAAY REQLLILMKD 180 VDSHNDHLTS KVQIIRNNLK ELEATRQELS LHNKPSL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.N03107.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012839104.1	1e-161	PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X2
Refseq	XP_012839105.1	1e-161	PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X3
TrEMBL	A0A022RAG6	1e-159	A0A022RAG6_ERYGU; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-55	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Migut.N03107.2.p
Entrez Gene	105959533