PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N03107.1.p | ||||||||
Common Name | LOC105959533, MIMGU_mgv1a013539mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | FAR1 | ||||||||
Protein Properties | Length: 218aa MW: 24708 Da PI: 9.0819 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 61.3 | 2.9e-19 | 51 | 136 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y++YA ++GF +r+ +s+ks+r+g+i++r + C + ++++ + +++ ++ r gC+a+l +k+e+ g+w+v k++ +HnH+l+ Migut.N03107.1.p 51 YYDNYAGRAGFLTRVLSSRKSERDGSIISRGLGCRNILNAQKACNI---SNEVGEKRRDGCTAMLLIKRENGGRWVVRKFVRDHNHPLV 136 8*********************************887666665444...6778888999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.2E-17 | 51 | 136 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MDMEDALDRG NGMIEASVVG EVTSYQADIN IENTEPYEGM TFESDSAARA YYDNYAGRAG 60 FLTRVLSSRK SERDGSIISR GLGCRNILNA QKACNISNEV GEKRRDGCTA MLLIKRENGG 120 RWVVRKFVRD HNHPLVASLP KRRPTYDEKD KRIQELTAEL RIKKRLSAAY REQLLILMKD 180 VDSHNDHLTS KVQIIRNNLK ELEATRQELS LHNKPSL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N03107.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012839104.1 | 1e-161 | PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X2 | ||||
Refseq | XP_012839105.1 | 1e-161 | PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X3 | ||||
TrEMBL | A0A022RAG6 | 1e-159 | A0A022RAG6_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13099 | 17 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 2e-55 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.N03107.1.p |
Entrez Gene | 105959533 |