PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N03102.1.p
Common NameLOC105959528, MIMGU_mgv1a012930mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family DBB
Protein Properties Length: 236aa    MW: 25930.4 Da    PI: 5.0121
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N03102.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.67.9e-06444539
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                       C+ +e+  ++  C   +  lC++C ++ H g       H++
  Migut.N03102.1.p  4 LCDVCENAAATVVCCAGEAALCAECDVQVH-GanklarkHQR 44
                      7*******9*********************.54677777775 PP
2zf-B_box26.71.1e-085394237
          zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                      + + C+ +++k +  fC +++ l+C+dC   +H+       H
  Migut.N03102.1.p 53 KLPPCDICQKKVAFVFCVEDRALFCKDCDKLIHSAnsltakH 94
                      6789*****************************655666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.229147IPR000315B-box-type zinc finger
CDDcd000218.65E-6347No hitNo description
SMARTSM003368.2E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501198.8455299IPR000315B-box-type zinc finger
SMARTSM003362.4E-145299IPR000315B-box-type zinc finger
PfamPF006435.1E-75395IPR000315B-box-type zinc finger
CDDcd000217.99E-65596No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MQILCDVCEN AAATVVCCAG EAALCAECDV QVHGANKLAR KHQRLLLECL SDKLPPCDIC  60
QKKVAFVFCV EDRALFCKDC DKLIHSANSL TAKHQRYLAT GIRVALSSSC NDESSRVQIE  120
PKPPKSNSTL TYLKIEPQIA SGASSPSWAV DEFLQFSDNE SPDKKEHLEF SELECLTDAN  180
LIGHESTEVP QLSVSLQPSN LDLNKATKLY TAHKRPRIDE TLDNDEEHFT VPNLG*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:23624715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N03102.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012839097.11e-173PREDICTED: B-box zinc finger protein 25 isoform X1
SwissprotQ9SID17e-74BBX25_ARATH; B-box zinc finger protein 25
TrEMBLA0A022RAG21e-172A0A022RAG2_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54102233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31380.19e-66salt tolerance homologue
Publications ? help Back to Top
  1. Gangappa SN,Holm M,Botto JF
    Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development.
    Plant Signal Behav, 2014.
    [PMID:23733077]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang X,Lin R
    Light signaling differentially regulates the expression of group IV of the B-box zinc finger family.
    Plant Signal Behav, 2017. 12(9): p. e1365213
    [PMID:28922622]