PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.N02832.1.p

Common Name

LOC105959311, MIMGU_mgv1a008594mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

bHLH

Protein Properties

Length: 369aa MW: 41535.9 Da PI: 5.0696

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.N02832.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.7	1.5e-11	201	244	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Migut.N02832.1.p 201 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 244 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.453	195	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.28E-15	199	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.6E-12	201	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-9	201	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.2E-15	202	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.98E-5	202	248	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MEYHTNEELG FLEELLGLRE MEYNNINYGD QHFNNNNGGW SLDYNFADDN NFPAPASTLT 60 NTTANTCFQD YSLPPPPLID DHNHHHQILM NNCYTPFGED HKSPPPDQFA VVDSSSLDTQ 120 TVMPYCHVED YYSMSSILGG DDEDGALFGL IDEEAGAPFC KAEPVPEMPA FNMGFCAQTQ 180 QSETTRKNKV KKLGGQPSKN LMAERRRRKR LNDRLSMLRS VVPKISKMDR TSILGDTIDY 240 MKELLERINN LQQEMHLGSN QLSLMTIFKD VKPNEVLVRN SPKFEVEKRK NGERRIEMCC 300 GGKAGLLVST VNTIEALGLE IKQCVISCFH DFSLQASCSE ELKKRGIVDS EDIKQALLRN 360 AGYAGRCL*

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MEYHTNEELG FLEELLGLRE MEYNNINYGD QHFNNNNGGW SLDYNFADDN NFPAPASTLT  60
NTTANTCFQD YSLPPPPLID DHNHHHQILM NNCYTPFGED HKSPPPDQFA VVDSSSLDTQ  120
TVMPYCHVED YYSMSSILGG DDEDGALFGL IDEEAGAPFC KAEPVPEMPA FNMGFCAQTQ  180
QSETTRKNKV KKLGGQPSKN LMAERRRRKR LNDRLSMLRS VVPKISKMDR TSILGDTIDY  240
MKELLERINN LQQEMHLGSN QLSLMTIFKD VKPNEVLVRN SPKFEVEKRK NGERRIEMCC  300
GGKAGLLVST VNTIEALGLE IKQCVISCFH DFSLQASCSE ELKKRGIVDS EDIKQALLRN  360
AGYAGRCL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	203	210	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.N02832.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012838834.1	0.0	PREDICTED: transcription factor bHLH61-like
Swissprot	Q9LSL1	3e-76	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A022R8Y2	0.0	A0A022R8Y2_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA789	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	2e-78	beta HLH protein 93

Link Out ? help Back to Top
Phytozome	Migut.N02832.1.p
Entrez Gene	105959311

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]