PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N02770.1.p
Common NameMIMGU_mgv1a0268241mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family LBD
Protein Properties Length: 123aa    MW: 12675.5 Da    PI: 6.9801
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N02770.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26083.33.6e-26299198
            DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90
                      +C++C+vlrr+C+++C+l+p++     p++q +++ +v k+FG+s ++++++a       ++++sl++eA+ r+ +Pv+Gavg++++++++++q+
  Migut.N02770.1.p  2 SCNGCRVLRRGCSENCILRPCLdwietPQAQGNATLFVSKFFGRSDLMSFIAA-----GGALIQSLLFEACGRTVNPVNGAVGLLSSGNWHICQA 91
                      6***************************************************9.....689********************************** PP

            DUF260 91 kaelallk 98
                      ++e++l++
  Migut.N02770.1.p 92 AVETVLAG 99
                      **998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.2641102IPR004883Lateral organ boundaries, LOB
PfamPF031958.5E-22296IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MSCNGCRVLR RGCSENCILR PCLDWIETPQ AQGNATLFVS KFFGRSDLMS FIAAGGALIQ  60
SLLFEACGRT VNPVNGAVGL LSSGNWHICQ AAVETVLAGG ALRAAASFGI PPPNSDGESS  120
CP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N02770.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074366.21e-59LOW QUALITY PROTEIN: LOB domain-containing protein 38-like
SwissprotQ9SN232e-54LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A022RBS02e-80A0A022RBS0_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.18e-57LOB domain-containing protein 38