PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N02736.1.p | ||||||||
Common Name | MIMGU_mgv1a024335mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | WOX | ||||||||
Protein Properties | Length: 149aa MW: 17333.5 Da PI: 7.4125 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 69 | 6e-22 | 9 | 68 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+++Le l++ r+p+a+++e+++ +l +++ ++V++WFqN++a+e++ Migut.N02736.1.p 9 TRWNPTQEQITILEMLYRGgMRTPNAQQIEQISVQLakygKIEGKNVFYWFQNHKARERQ 68 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 119.2 | 1.7e-38 | 9 | 70 | 4 | 65 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi+iLe+ly+ G+rtPn+++i++i+ +L++yGkie+kNVfyWFQN+kaRerqkq Migut.N02736.1.p 9 TRWNPTQEQITILEMLYRGGMRTPNAQQIEQISVQLAKYGKIEGKNVFYWFQNHKARERQKQ 70 8***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.463 | 4 | 69 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-5 | 6 | 73 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.58E-12 | 7 | 74 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.64E-4 | 9 | 70 | No hit | No description |
Pfam | PF00046 | 1.5E-19 | 9 | 68 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-8 | 10 | 68 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
QVEAQAGGTR WNPTQEQITI LEMLYRGGMR TPNAQQIEQI SVQLAKYGKI EGKNVFYWFQ 60 NHKARERQKQ KRITTTTIFN TTPDSSPSPP PFIISSCQLI SSSPEEFEYC TPYKRKWRSW 120 GFDQEEEQVE DRTLNLFPLH PEGIKFMD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N02736.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012838359.1 | 5e-91 | PREDICTED: WUSCHEL-related homeobox 4-like | ||||
Swissprot | Q6X7J9 | 2e-47 | WOX4_ARATH; WUSCHEL-related homeobox 4 | ||||
TrEMBL | A0A022R782 | 1e-106 | A0A022R782_ERYGU; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6186 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46480.1 | 6e-47 | WUSCHEL related homeobox 4 |
Link Out ? help Back to Top | |
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Phytozome | Migut.N02736.1.p |