PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N02736.1.p
Common NameMIMGU_mgv1a024335mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family WOX
Protein Properties Length: 149aa    MW: 17333.5 Da    PI: 7.4125
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N02736.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox696e-22968357
                      --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      +R+++t+eq+++Le l++   r+p+a+++e+++ +l    +++ ++V++WFqN++a+e++
  Migut.N02736.1.p  9 TRWNPTQEQITILEMLYRGgMRTPNAQQIEQISVQLakygKIEGKNVFYWFQNHKARERQ 68
                      7*****************99**************************************97 PP

2Wus_type_Homeobox119.21.7e-38970465
  Wus_type_Homeobox  4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       tRW+Pt+eQi+iLe+ly+ G+rtPn+++i++i+ +L++yGkie+kNVfyWFQN+kaRerqkq
   Migut.N02736.1.p  9 TRWNPTQEQITILEMLYRGGMRTPNAQQIEQISVQLAKYGKIEGKNVFYWFQNHKARERQKQ 70
                       8***********************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.463469IPR001356Homeobox domain
SMARTSM003891.3E-5673IPR001356Homeobox domain
SuperFamilySSF466891.58E-12774IPR009057Homeodomain-like
CDDcd000862.64E-4970No hitNo description
PfamPF000461.5E-19968IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-81068IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
QVEAQAGGTR WNPTQEQITI LEMLYRGGMR TPNAQQIEQI SVQLAKYGKI EGKNVFYWFQ  60
NHKARERQKQ KRITTTTIFN TTPDSSPSPP PFIISSCQLI SSSPEEFEYC TPYKRKWRSW  120
GFDQEEEQVE DRTLNLFPLH PEGIKFMD*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N02736.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012838359.15e-91PREDICTED: WUSCHEL-related homeobox 4-like
SwissprotQ6X7J92e-47WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBLA0A022R7821e-106A0A022R782_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61862335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.16e-47WUSCHEL related homeobox 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  3. Guo X, et al.
    Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation.
    PLoS Pathog., 2017. 13(2): p. e1006142
    [PMID:28158306]
  4. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  5. Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O
    WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees.
    New Phytol., 2017. 215(2): p. 642-657
    [PMID:28609015]
  6. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]