PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N02661.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB_related | ||||||||
Protein Properties | Length: 265aa MW: 30437.4 Da PI: 9.6949 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.3 | 1.1e-15 | 63 | 107 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++T E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++ Migut.N02661.1.p 63 VKMTSHEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 107 689******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-8 | 42 | 70 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.77E-20 | 42 | 113 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.31 | 43 | 56 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 24.856 | 57 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-15 | 61 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-13 | 63 | 106 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.73E-11 | 64 | 107 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-19 | 71 | 108 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MDRRGRCPAG TLRELVRRSP MGFHSKSIRF EGFGGRHYIG LKRTGKSCRL RWVNYLHPGL 60 KKVKMTSHEE RLVLELHSKW GNRWSRIARK LPGRTDNEIK NYWRTHMRKK AQQSKKQKKS 120 ISPISSSDNS SSSSSISNSP TTEDFTPAKE TSFYDTGGVE IKDLMIPAAA AAVEPGESKK 180 NGVELAKSGT KEVYSMDDLW KEFEFSGERC ELTWQTVVSP IWDYCPSNDD SFLWSMDEED 240 EKSKMLMQPM GDQFYSFPFY NYNI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-18 | 43 | 111 | 37 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 4e-18 | 43 | 111 | 91 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-18 | 43 | 111 | 91 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 3e-18 | 43 | 111 | 60 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 1e-18 | 43 | 111 | 37 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-18 | 43 | 111 | 37 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N02661.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012838674.1 | 0.0 | PREDICTED: transcription factor MYB59-like | ||||
Swissprot | Q9LX82 | 4e-48 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A022R6Y8 | 1e-111 | A0A022R6Y8_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.4 | 1e-53 | myb domain protein 48 |
Link Out ? help Back to Top | |
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Phytozome | Migut.N02661.1.p |
Publications ? help Back to Top | |||
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