PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N02641.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | WOX | ||||||||
Protein Properties | Length: 172aa MW: 19941.5 Da PI: 10.3653 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 51.6 | 1.5e-16 | 16 | 75 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 R+++t+eq+ +L +l+++ +p+ ++ e+++++l +++ ++V +WFqNr+a+++k Migut.N02641.1.p 16 GRWSPTQEQVMVLHALYRSgLTKPNPSQVERITSQLslygRVQSKNVLYWFQNRKARDRK 75 6*****************99****************999999****************97 PP | |||||||
2 | Wus_type_Homeobox | 95.1 | 6.1e-31 | 14 | 75 | 2 | 63 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerq 63 ++ RW+Pt+eQ+++L++ly+sGl Pn ++++rit++L+ yG++++kNV yWFQNrkaR+r+ Migut.N02641.1.p 14 SSGRWSPTQEQVMVLHALYRSGLTKPNPSQVERITSQLSLYGRVQSKNVLYWFQNRKARDRK 75 578*********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.062 | 11 | 76 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.54E-10 | 12 | 79 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.7E-5 | 13 | 80 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.4E-14 | 16 | 75 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-9 | 17 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.74E-4 | 17 | 76 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MSPSRANCSS TSSSSGRWSP TQEQVMVLHA LYRSGLTKPN PSQVERITSQ LSLYGRVQSK 60 NVLYWFQNRK ARDRKNLRNK LHQQHQPQLY HHHHQLLINN YYNTTPSPFA LQLFNCFPQE 120 VTADRGRMTW TADDLPKECS IETNGQDSVR YNRKKKPLET LELFPLRPTT V* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N02641.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012838347.1 | 1e-126 | PREDICTED: WUSCHEL-related homeobox 3-like | ||||
TrEMBL | A0A022R7K5 | 3e-82 | A0A022R7K5_ERYGU; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2959 | 19 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 4e-22 | WOX family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.N02641.1.p |