PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N02611.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ARF
Protein Properties Length: 838aa    MW: 92395.6 Da    PI: 6.8329
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N02611.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82.1e-23194295199
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+lt sd++++g +++p++ ae++      +++ + s++l+ +d++   W++++iyr++++r++lt+GW+ Fv++++L++gD v+F   + 
  Migut.N02611.1.p 194 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyKEQ-RPSQELVAKDLHEVDWKFRHIYRGQPRRHLLTTGWSIFVSQKNLQSGDAVLFL--RG 283
                       99****************************86333.45679************************************************..44 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                       +++el+++++r+
  Migut.N02611.1.p 284 ESGELRLGIRRA 295
                       9999*****996 PP
2Auxin_resp105.37.3e-35321401282
        Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                       a+a++++ +F v+Y+Pra++s+Fvv+++k++k +++++ vG Rfkm+f+ +ds+err+sG+v+g+ d+dp+rWpnSkWr+L
  Migut.N02611.1.p 321 ANALASNGTFPVFYSPRATHSDFVVPYQKYVKCTTTRIPVGARFKMRFDFDDSPERRFSGVVTGIGDSDPYRWPNSKWRCL 401
                       6899999*************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-39183307IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.19E-44184310IPR015300DNA-binding pseudobarrel domain
CDDcd100178.55E-21192294No hitNo description
PfamPF023624.1E-21194295IPR003340B3 DNA binding domain
PROSITE profilePS5086312.731194296IPR003340B3 DNA binding domain
SMARTSM010193.1E-22194296IPR003340B3 DNA binding domain
PfamPF065072.8E-29321401IPR010525Auxin response factor
PROSITE profilePS5174521.29714796IPR000270PB1 domain
SuperFamilySSF542771.96E-11717793No hitNo description
PfamPF023092.4E-5762799IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MEIIDLNHAV NEGVERNGVA ACVNGGECDK GGGGGCVYGC LSISTSSCSS NAAAASESSS  60
PCSKKKSDAP PPPPPSSIFM ELWHACAGPL TNFPKKGNVV VYFPQGHVEQ ASSSALTFPP  120
MEIPTFDLPS QIFCRVVDVQ LLANKENDEV YTQLNLLPLS EMVGPKSEGK ESGNTSGDED  180
ETRVQPAKST SHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLDYKEQRP SQELVAKDLH  240
EVDWKFRHIY RGQPRRHLLT TGWSIFVSQK NLQSGDAVLF LRGESGELRL GIRRAARPRN  300
GLPDSIIKNQ TSFKNVLSPL ANALASNGTF PVFYSPRATH SDFVVPYQKY VKCTTTRIPV  360
GARFKMRFDF DDSPERRFSG VVTGIGDSDP YRWPNSKWRC LMVRWDDDIM SNHQERVSPW  420
DIDFSGNYAS MSIQSSPRTK KLRSAPHSSP ISGGASLLDF EESVRSSKVL QGQENVGLAT  480
HLYRSDHRVT NRQLEFDMQP TGLGLFNPNP APNRIDKINY GEFVRNQTPS TFTGFLESNW  540
FPKVLQGQEI CSFKSLSGKT GLDLGPWAKP EPVYKGVLHH SSSNNNNNTH QRHSNNNILP  600
SFYPLASEGS RSMHVPHKGV YQSTPSMMMS NFSDCQTRSS NHLSNRTSVL SGPTNAEPVS  660
DKASSPAVTS IMHVKNVNDD EIHLKEKVPT CKIFGFSLTE DHSAALNLLG PSKRSCTKVH  720
KQGSLVGRAV DLSRLYGYDD LLTELERLFS MEGLLRDPNN GWRVLYTDSD NDMMVVGDDP  780
WHEFVEVVTK IHIYTQEEVE KMSVGLMNSD DTKSCLEEAA PPAVPDVSKS SSVGQPD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1198142922359Auxin response factor 1
4ldw_A1e-1198142922359Auxin response factor 1
4ldw_B1e-1198142922359Auxin response factor 1
4ldx_A1e-1198142922359Auxin response factor 1
4ldx_B1e-1198142922359Auxin response factor 1
4ldy_A1e-1198142922359Auxin response factor 1
4ldy_B1e-1198142922359Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N02611.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012838640.10.0PREDICTED: auxin response factor 4
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A3T0U3A10.0A0A3T0U3A1_ERYLE; Auxin response factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51432234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]