PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N02592.2.p | ||||||||
Common Name | LOC105959130, MIMGU_mgv1a002381mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | ARF | ||||||||
Protein Properties | Length: 682aa MW: 74766 Da PI: 7.358 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.9 | 2.2e-24 | 115 | 216 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f k+lt+sd+++ g +++p+ +ae++ ++ + +t++d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF+ + Migut.N02592.2.p 115 FPKTLTQSDANNGGGFSVPRYCAETIfppldytADPPVQ--NVTVRDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFM--R 203 679****************************98666667..6999*********************************************..3 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 ++ l+v+++r+ Migut.N02592.2.p 204 AVNGDLCVGIRRA 216 478888****997 PP | |||||||
2 | Auxin_resp | 104.4 | 1.4e-34 | 280 | 361 | 3 | 83 |
Auxin_resp 3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a++ ++FevvY+Pras+ eF+vk+++v++a++++++ Gm+fkm fet+dss+ ++ +Gtv++v+ +dpvrWpnS+W++L+ Migut.N02592.2.p 280 FLAASCQPFEVVYCPRASAMEFCVKASSVNAAMRIHWCSGMKFKMPFETDDSSRVSWfMGTVASVQFVDPVRWPNSPWKLLQ 361 568899**************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.2E-37 | 106 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.28E-29 | 110 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.45E-19 | 114 | 211 | No hit | No description |
PROSITE profile | PS50863 | 13.098 | 115 | 217 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.4E-23 | 115 | 217 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-22 | 115 | 216 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 9.6E-29 | 280 | 361 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 15.478 | 568 | 649 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 682 aa Download sequence Send to blast |
MKEIVEKSLD SELWHACAGC MVKMPPVNSK VFYFPQGHAE HSLASVDFGA LPMIPPMILC 60 RVSSVKYLAD HETDEVYAKI GLIPVGNNER VSYDDEDGIF GRINKSESGE KAASFPKTLT 120 QSDANNGGGF SVPRYCAETI FPPLDYTADP PVQNVTVRDV HGETWKFRHI YRGTPRRHLL 180 TTGWSTFVNQ KKLVAGDSIV FMRAVNGDLC VGIRRARRGG GVSGNEYSSS VWNYGGGGNL 240 GVVSGFLEDE NNKLMHRSGG VGKSREKGRV SPESVVEAAF LAASCQPFEV VYCPRASAME 300 FCVKASSVNA AMRIHWCSGM KFKMPFETDD SSRVSWFMGT VASVQFVDPV RWPNSPWKLL 360 QVTWDEPDLL QNVKCVSPWL VELASNMPAL HLSPFSPPRK KLCLPLHHPN LPLDGRFPLP 420 SFSGNPLGPS SSLRCLPDNN ITLGIQGARH AQIGVPLTDL HFSNKQLQTG ILPPPSGNLP 480 LLEYPRANVL DRNEDGNDNV SCLLSMGNSN KKKSDDETCG AKKTPLFVLF GQPIHTEKQM 540 SYDRPGDAFS RVAFGQNASG GTKSLSTDFL CKVFLESEEV GHSVDLSALG SYKELYKKLE 600 DMFRIDRSEI VGHLFYRDDA SGAAKQVGEE PFSEFVKATK TLRILMKPGS DDTERKLVTG 660 LPTSELGRNS SNQTGALSIF A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-80 | 9 | 382 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N02592.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012838622.1 | 0.0 | PREDICTED: auxin response factor 18-like | ||||
Refseq | XP_012838623.1 | 0.0 | PREDICTED: auxin response factor 18-like | ||||
Refseq | XP_012838624.1 | 0.0 | PREDICTED: auxin response factor 18-like | ||||
Refseq | XP_012838625.1 | 0.0 | PREDICTED: auxin response factor 18-like | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A022RB61 | 0.0 | A0A022RB61_ERYGU; Auxin response factor |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 0.0 | auxin response factor 10 |
Link Out ? help Back to Top | |
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Phytozome | Migut.N02592.2.p |
Entrez Gene | 105959130 |
Publications ? help Back to Top | |||
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