PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N02591.1.p | ||||||||
Common Name | LOC105959128, MIMGU_mgv1a0095201mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | GATA | ||||||||
Protein Properties | Length: 340aa MW: 37382.3 Da PI: 8.9549 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.7 | 3.8e-19 | 211 | 244 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C++ kTp+WR+gp g+ktLCnaCG++yr+ + Migut.N02591.1.p 211 CTHCQVMKTPQWREGPAGPKTLCNACGVRYRSGR 244 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 11.517 | 205 | 241 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 4.4E-15 | 205 | 255 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.7E-15 | 208 | 268 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.0E-14 | 209 | 242 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.09E-14 | 210 | 267 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 211 | 236 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 9.6E-17 | 211 | 244 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MSEVKEPYIC WEAIVNGTAG EAELDNILSI LDYPVESFEG DEEFVGDWDS TKSEFLGPIP 60 SDVLIGQPVI GHNKSTPIAP VDATPYPNKS IEVKEQGIFQ TQSPVSVLES SRSTSSGKSP 120 LIKSRITKRA RSKRARKPSG LSPWHLIPTL FASCPDAVKK RGRRKKLPQQ AIENSSSLKA 180 IIQFQGCSER PTELQSSAAQ QRSPTATTKR CTHCQVMKTP QWREGPAGPK TLCNACGVRY 240 RSGRLFPEYR PAASPTFVPT VHSNSHRKVV EMRTKGQNGK IEERSVVVET RTEGQNGKIE 300 ERSVVIETRT EGQNGKTEER SMEVIVPVSS SSCSFDHVC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N02591.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012838617.1 | 0.0 | PREDICTED: putative GATA transcription factor 13 | ||||
TrEMBL | A0A022R8X1 | 0.0 | A0A022R8X1_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3134 | 21 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08010.2 | 3e-37 | GATA transcription factor 11 |
Link Out ? help Back to Top | |
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Phytozome | Migut.N02591.1.p |
Entrez Gene | 105959128 |