PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N02569.1.p | ||||||||
Common Name | LOC105958873, MIMGU_mgv1a025151mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB | ||||||||
Protein Properties | Length: 349aa MW: 39124.4 Da PI: 7.2554 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.6 | 4.4e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++ ++++G+g +W + ++++g++R++k+c++rw++yl Migut.N02569.1.p 14 KGPWSPEEDAKLKEFIEKFGTGgNWIALPQKVGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 40.2 | 8.1e-13 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ eEd+l+ + + G++ W+ Ia+ ++ gRt++++k++w++ Migut.N02569.1.p 69 GEFSDEEDKLICTLYATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.919 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.2E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-13 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.60E-10 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.447 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 3.0E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.9E-12 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.42E-9 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDAKLKEFIE KFGTGGNWIA LPQKVGLKRC GKSCRLRWLN 60 YLRPNIRHGE FSDEEDKLIC TLYATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMSM 120 IIPSSNLQAK FPPPFSGTLQ NYQPLYNDYN NSSFFSFQAS ANYKSLHTIS APPQNHFLYT 180 TNNSDNNNNN NFSLSTTTAA ATQYPYNYDQ NQGLVDFQYY GKDDNNNNNM LVFGGNDHQP 240 SCSSSDGSCS QVTYGGKDYQ VKQEEIMAAA GGVCRQGFVI SNNGVEEKQK FMLINNPNIT 300 DQKANGVLEN SCNNGSIVIN NNGGNSFLFN DDDDENKTCE KGMYYYYQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-27 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N02569.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012838332.1 | 0.0 | PREDICTED: transcription factor RAX2-like | ||||
TrEMBL | A0A022R8U0 | 0.0 | A0A022R8U0_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 8e-76 | myb domain protein 84 |
Link Out ? help Back to Top | |
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Phytozome | Migut.N02569.1.p |
Entrez Gene | 105958873 |