PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N02411.1.p
Common NameMIMGU_mgv1a022282mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 511aa    MW: 56735.2 Da    PI: 4.9469
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N02411.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.7e-163986148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT  Ed +lv++v++ G g+W+++ ++ g+ R++k+c++rw ++l
  Migut.N02411.1.p 39 KGPWTSAEDAILVQYVNKNGEGNWNAVQKHSGLARCGKSCRLRWANHL 86
                      79******************************************9986 PP
2Myb_DNA-binding51.32.7e-1692135146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +g++T+eE+ +++++++++G++ W++ a++++ gRt++++k++w++
  Migut.N02411.1.p  92 KGAFTAEEERRIIELHAKMGNK-WARMAAELP-GRTDNEIKNYWNT 135
                       799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.7973486IPR017930Myb domain
SuperFamilySSF466891.68E-2937133IPR009057Homeodomain-like
SMARTSM007173.8E-133888IPR001005SANT/Myb domain
PfamPF002498.4E-153986IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-234093IPR009057Homeodomain-like
CDDcd001671.30E-104186No hitNo description
PROSITE profilePS5129426.01887141IPR017930Myb domain
SMARTSM007173.6E-1691139IPR001005SANT/Myb domain
PfamPF002494.4E-1592135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2594140IPR009057Homeodomain-like
CDDcd001676.36E-1294135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MSMTSESDER MIPINGADSP STDDANSGGD GGLNGPLKKG PWTSAEDAIL VQYVNKNGEG  60
NWNAVQKHSG LARCGKSCRL RWANHLRPDL KKGAFTAEEE RRIIELHAKM GNKWARMAAE  120
LPGRTDNEIK NYWNTRIKRR QRAGLPIYPP DICLQALNEG SQQNEDTINT FSPNDVHRPD  180
FIQISTLDVP SLEFKGLEIN QPLYPLDIPS NTLLDISTNT LLSQGLHPHP HPHNHPFYLH  240
PPSKRLRSGA PESMFPCINI VPPIGMSQYQ SNDGLLLSCP SSDPSAWAMK MELPSLQTQM  300
RNTTANTNWG GPPPSPANNP FFEPADVLMQ SPPPNEGAQL CNLSPQNSGL LNEVLYESGA  360
LNNSKTSYSF PQPDSYIDID SSNANVLCDA EWEPYGERLS PLVHSLDDPH SDETKQPVKD  420
EDDYLNPMQY NDKFETNPTI FSKPDFMYPS TSFDGPVKQH PMNDNYLLKD VIGTFLGDDF  480
RDCKKMDTGA TSSSQGHCHD SCAWNVMRTI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-31371405107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N02411.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012838469.10.0PREDICTED: transcription factor GAMYB-like
RefseqXP_012838470.10.0PREDICTED: transcription factor GAMYB-like
RefseqXP_012838471.10.0PREDICTED: transcription factor GAMYB-like
RefseqXP_012838472.10.0PREDICTED: transcription factor GAMYB-like
TrEMBLA0A022R8D40.0A0A022R8D4_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20212358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.14e-72myb domain protein 33