PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N02362.1.p
Common NameLOC105958968, MIMGU_mgv1a022652mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family GRAS
Protein Properties Length: 466aa    MW: 52570.2 Da    PI: 5.6245
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N02362.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS440.61.1e-134464621374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lL++cA++v+sg+le+a+ +L ++s+las++gd+mqR+a+yf eALa r++r+++++yka+++++ +  + +ee+ ++k+f++   + k+
  Migut.N02362.1.p  46 LIHLLVTCANHVASGSLENANIALDQISHLASSEGDTMQRIASYFSEALADRILRTWPGVYKAFHSTRIP--DLAEETLVRKMFFDFLLFTKV 136
                       689*************************************************************999998..69******************* PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                       ++++ Nq I+ea+ege+ vH+iD+++s+++QW aL++ L++Rpegpp+lRiTg+++    +ke le++++ L++ Ae+l++pf+fn+ ++++l
  Migut.N02362.1.p 137 AFVISNQVIVEAMEGERIVHVIDLNASEPAQWCALIRDLSARPEGPPHLRITGIHQ----QKEVLENMAHVLTEEAEKLDLPFQFNP-IVTKL 224
                       ********************************************************....9**************************.7999* PP

              GRAS 187 edleleeLrvkpgEalaVnlvlqlhrll.................................................desvsleserdevLkl 230
                       e+l++++Lrvk+gEala+++++qlh+ll                                                 ++s+s+++ ++++L +
  Migut.N02362.1.p 225 ENLDFDKLRVKTGEALAISSIMQLHTLLapdssinkspstpmnnglsihlqrvahmnqstlrellekdvlvndyspsNDSASSSN-IESFLGA 316
                       ***************************************************************************9766666666.999**** PP

              GRAS 231 vkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323
                       +++lsPkv+vv+eq++dhn+++++er++eal++y+alfd+le+ lpr s er k+E++llg+ei+n++aceg errerhe+lekWr+r+e +G
  Migut.N02362.1.p 317 LWGLSPKVMVVTEQDSDHNGKNLMERLSEALYFYAALFDCLESALPRVSVERLKMEKMLLGEEIKNIIACEGVERRERHEKLEKWRRRFELCG 409
                       ********************************************************************************************* PP

              GRAS 324 Fkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       F++vpls++ + qa++l++ ++  +dgyr+ eesg +v++W+drpL+svSaWr
  Migut.N02362.1.p 410 FTNVPLSYYGMLQANRLMQSCSnsGDGYRIREESGNVVICWQDRPLFSVSAWR 462
                       *********************977789*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.32220440IPR005202Transcription factor GRAS
PfamPF035143.7E-13246462IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MFQEDGSSSI TSSPLQMLPM MSLSPGMTSP YPWLNELKPE ERGLCLIHLL VTCANHVASG  60
SLENANIALD QISHLASSEG DTMQRIASYF SEALADRILR TWPGVYKAFH STRIPDLAEE  120
TLVRKMFFDF LLFTKVAFVI SNQVIVEAME GERIVHVIDL NASEPAQWCA LIRDLSARPE  180
GPPHLRITGI HQQKEVLENM AHVLTEEAEK LDLPFQFNPI VTKLENLDFD KLRVKTGEAL  240
AISSIMQLHT LLAPDSSINK SPSTPMNNGL SIHLQRVAHM NQSTLRELLE KDVLVNDYSP  300
SNDSASSSNI ESFLGALWGL SPKVMVVTEQ DSDHNGKNLM ERLSEALYFY AALFDCLESA  360
LPRVSVERLK MEKMLLGEEI KNIIACEGVE RRERHEKLEK WRRRFELCGF TNVPLSYYGM  420
LQANRLMQSC SNSGDGYRIR EESGNVVICW QDRPLFSVSA WRIRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-633846411381Protein SCARECROW
5b3h_A9e-643846410380Protein SCARECROW
5b3h_D9e-643846410380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N02362.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012838428.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A022R6580.0A0A022R658_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29142453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]