PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N02298.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | LBD | ||||||||
Protein Properties | Length: 168aa MW: 18677.1 Da PI: 7.3256 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.5 | 2e-42 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +Ca Ck+lrr+Ca+d v+apyfpa++p+kfa vhk+FGasnv k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++ Migut.N02298.1.p 13 PCAECKILRRRCAADRVFAPYFPADDPHKFASVHKVFGASNVNKMLQELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDMLQTQ 105 7******************************************************************************************** PP DUF260 94 lallkee 100 lal+++e Migut.N02298.1.p 106 LALAQAE 112 **99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.416 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.3E-42 | 13 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MKDSSRKQGA ASPCAECKIL RRRCAADRVF APYFPADDPH KFASVHKVFG ASNVNKMLQE 60 LPEHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID MLQTQLALAQ AEVVHMRMRH 120 VTNSPENASP SSRSHMSQLS HQAKSLFSMD MVDQHHHNME EDDSLWG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-47 | 9 | 125 | 7 | 123 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-47 | 9 | 125 | 7 | 123 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N02298.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012828930.1 | 1e-123 | PREDICTED: LOB domain-containing protein 4-like | ||||
Swissprot | Q9SHE9 | 1e-68 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A2G9HN48 | 5e-90 | A0A2G9HN48_9LAMI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 5e-71 | LOB domain-containing protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Migut.N02298.1.p |