PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N02282.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 314aa    MW: 33207.4 Da    PI: 9.3504
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N02282.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.94.5e-10108133227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       kt+lC+ f     CkyGd+C+FaHg+
  Migut.N02282.1.p 108 KTRLCNKFKTAEGCKYGDTCNFAHGE 133
                       8***********************96 PP
2zf-CCCH32.41.5e-10280305127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +kt+lC  f r G C +GdrC+FaHg+
  Migut.N02282.1.p 280 FKTKLCEKFTR-GSCTFGDRCHFAHGE 305
                       69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.43764IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.6763765IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-63863IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-73962IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-13104136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-8105137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.441106134IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012106133IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-7108133IPR000571Zinc finger, CCCH-type
SuperFamilySSF547919.35E-16179267IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.105.6E-16182251IPR004088K Homology domain, type 1
SMARTSM003229.1E-13182252IPR004087K Homology domain
PROSITE profilePS5008414.508183247IPR004088K Homology domain, type 1
PfamPF000131.7E-11185249IPR004088K Homology domain, type 1
CDDcd001059.17E-15185247No hitNo description
Gene3DG3DSA:4.10.1000.106.3E-17275310IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-9279309IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.896279306IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-7279305IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-8280305IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEFGGAKKRG VPEGGFNGNG GFKKSKQEME SFTTGIGSKL KPCTKFFSTS GCPFGEGCHF  60
LHYVPGGIKA VTQILGNNPA LPAANRNPVA PPPQHPPSFQ ENRPLAVKTR LCNKFKTAEG  120
CKYGDTCNFA HGEWELGKQT LPPHDDPRSN TGQMPGRYGG GGGDYMEAAP PNHGMAAASF  180
GASATAKISI DASVAGAVIG KGGVNSKQIC RMTGAKLSVR DHESDANLRN VELEGSFDQI  240
KQASQMVREL IVNIRAGSGP PSRSHHGMSG HNSAPSSNNF KTKLCEKFTR GSCTFGDRCH  300
FAHGEEELRK SGV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N02282.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0944674e-36BT094467.1 Soybean clone JCVI-FLGm-18P9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012829036.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-107C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A022PUV20.0A0A022PUV2_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-51C3H family protein