PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N02248.4.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family bHLH
Protein Properties Length: 484aa    MW: 53372.3 Da    PI: 7.6075
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N02248.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.3e-16300347355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Migut.N02248.4.p 300 QVHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 347
                       57*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.5E-21295355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.057297346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-21300375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-14300347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.54E-16302351No hitNo description
SMARTSM003533.2E-18303352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MNHRVPNFQD MEHNYSIPPR KKPAATAGEE EIMELLWQNG QVVVQTQNQR LPKKTGGGGG  60
GVMIPAEREM RPAGGDEQQQ QHLFMQEDEM SAWLQYPLDD SSFDRDLYAD LLFPAPPPVN  120
AVPQPPGAIR PPPDNPPRLQ NFMHFSRLPI RPRTETTTTT NKTSVITAAR EATVVESNET  180
PAAAARQSSF SHRIVDSSRP QQVIVESGTA PARELAAAGT CEVSVTSSPG GSRASFSGSG  240
EQQQRPPPPP PPPLNNRKRK AREADENECQ SEDIEFEVAG GEAKKQVCGS ASTKRSRAAQ  300
VHNLSERRRR DRINEKMKAL QELIPRCNKS DKASMLDEAI EYLKSLQVQV QMMSMGCGMV  360
PMMYPGMQQY MPTMGMGMGM GMGMGMEMGM NRPPMVQYPS MPMPNPRFPM PGFHQPCNQT  420
DPIPNPAVPH NQNQAHMPNF VDPYQQFHGL HPSQLPQNQG VARPGTNKPS TSRDIGNPDN  480
RQG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305310ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N02248.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012829057.10.0PREDICTED: transcription factor PIF1 isoform X2
TrEMBLA0A022PNX70.0A0A022PNX7_ERYGU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.34e-60phytochrome interacting factor 3-like 5