PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N02248.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | bHLH | ||||||||
Protein Properties | Length: 475aa MW: 52220 Da PI: 7.5851 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.7 | 3.2e-16 | 291 | 338 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq Migut.N02248.2.p 291 QVHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 338 57*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 8.2E-21 | 286 | 346 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.057 | 288 | 337 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.33E-21 | 291 | 366 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.7E-14 | 291 | 338 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.43E-16 | 293 | 342 | No hit | No description |
SMART | SM00353 | 3.2E-18 | 294 | 343 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006783 | Biological Process | heme biosynthetic process | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009959 | Biological Process | negative gravitropism | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0010161 | Biological Process | red light signaling pathway | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
MEHNYSIPPR KKPAATASGE EEIMELLWQN GQVVVQTQNQ RLPKKTGGGG GGVMIPAERE 60 MRPAGGDEQQ QQHLFMQEDE MSAWLQYPLD DSSFDRDLYA DLLFPAPPPV NAVPQPPGAI 120 RPPPDNPPRL QNFMHFSRLP IRPRTETTTT TNKTSVITAA REATVVESNE TPAAAARQSS 180 FSHRIVDSSR PQQVIVESGT APARELAAAG TCEVSVTSSP GGSRASFSGS GEQQQRPPPP 240 PPPPLNNRKR KAREADENEC QSEDIEFEVA GGEAKKQVCG SASTKRSRAA QVHNLSERRR 300 RDRINEKMKA LQELIPRCNK SDKASMLDEA IEYLKSLQVQ VQMMSMGCGM VPMMYPGMQQ 360 YMPTMGMGMG MGMGMGMEMG MNRPPMVQYP SMPMPNPRFP MPGFHQPCNQ TDPIPNPAVP 420 HNQNQAHMPN FVDPYQQFHG LHPSQLPQNQ GVARPGTNKP STSRDIGNPD NRQG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 296 | 301 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00074 | ChIP-chip | Transfer from AT2G20180 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N02248.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012829056.1 | 0.0 | PREDICTED: transcription factor PIF1 isoform X1 | ||||
TrEMBL | A0A022PNX7 | 0.0 | A0A022PNX7_ERYGU; Uncharacterized protein | ||||
STRING | Migut.N02248.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20180.3 | 4e-58 | phytochrome interacting factor 3-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Migut.N02248.2.p |