PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N02188.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | ERF | ||||||||
Protein Properties | Length: 173aa MW: 18738.3 Da PI: 10.3158 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.2 | 6.4e-21 | 29 | 80 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++++GVr ++ +gr++AeIrd ++ ++r +lg+f+taeeAa a+++a+ +l+g+ Migut.N02188.1.p 29 PHFRGVRKRP-WGRYAAEIRDpWK----KTRKWLGTFDTAEEAALAYDEAAMSLRGA 80 689*******.**********883....5*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.59E-29 | 29 | 86 | No hit | No description |
Pfam | PF00847 | 5.7E-14 | 29 | 79 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.7E-33 | 30 | 93 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.97 | 30 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-21 | 30 | 87 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-30 | 30 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-10 | 31 | 42 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-10 | 53 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MVVEKLHNPS GGAAAAAAAQ PPFPAKKGPH FRGVRKRPWG RYAAEIRDPW KKTRKWLGTF 60 DTAEEAALAY DEAAMSLRGA RAKTNFTYGG GGGVSAAAPP MSVNLGYWRT PEFSRPIAEP 120 KESASPTPSP SEYKGYKMEE VGAVVMSEQG KQIRSEKNRP FLFDLNLPAP LF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-22 | 27 | 86 | 2 | 62 | ATERF1 |
3gcc_A | 2e-22 | 27 | 86 | 2 | 62 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N02188.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012828889.1 | 1e-122 | PREDICTED: ethylene-responsive transcription factor 11-like | ||||
TrEMBL | A0A022PQ95 | 1e-106 | A0A022PQ95_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14136 | 12 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 6e-22 | ERF domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Migut.N02188.1.p |