PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N01771.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | bHLH | ||||||||
Protein Properties | Length: 195aa MW: 20812.8 Da PI: 8.6026 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.8 | 5.4e-10 | 155 | 180 | 5 | 30 |
HHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 5 hnerErrRRdriNsafeeLrellPka 30 hn+ Er+RRd+iN+++ +L++l+P++ Migut.N01771.1.p 155 HNQSERKRRDKINQRMKTLQKLVPNS 180 9***********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.15E-9 | 149 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.614 | 150 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.8E-10 | 154 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-7 | 155 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.61E-8 | 155 | 187 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MDAFVPGRNN IPRNDDDEHN PENSAHVLEY VVGSSTHVGS CSGAAAHGGR SALAAACGCK 60 VVGATTAASE SATFGGRDDS FQLTLDTCGG LTSTSMWSPE NTSSGKEYSR TSADDHDYSG 120 CRSRSQSEAD DCGKRKLGHG KSSVTIKKTR AAAIHNQSER KRRDKINQRM KTLQKLVPNS 180 SKVTEILYNN RNFV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 158 | 163 | ERKRRD |
2 | 159 | 164 | RKRRDK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N01771.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012831499.1 | 1e-133 | PREDICTED: transcription factor UNE10-like | ||||
TrEMBL | A0A022RPH0 | 1e-132 | A0A022RPH0_ERYGU; Uncharacterized protein (Fragment) | ||||
STRING | Migut.N01771.1.p | 1e-143 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4367 | 21 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 3e-26 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.N01771.1.p |