PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.N01757.1.p | ||||||||
Common Name | LOC105952359, MIMGU_mgv1a012916mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 237aa MW: 27217.6 Da PI: 6.9562 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.4 | 1.4e-12 | 8 | 53 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqk 46 +g+W +eEd l++ v+++G+g+W++ r g ++Rt+k+c++rw + Migut.N01757.1.p 8 KGPWKEEEDRVLIEHVRKYGPGHWSS-LRSKGlLRRTGKSCRLRWVN 53 79************************.777778************87 PP | |||||||
2 | Myb_DNA-binding | 42 | 2.1e-13 | 64 | 103 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++T+eE+ + +++ q+G++ W++Ia ++ gRt++++k++w Migut.N01757.1.p 64 KFTAEEERRVIELQGQFGNK-WARIATYLT-GRTDNDVKNFW 103 89******************.********9.*********** PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.68 | 3 | 59 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-21 | 3 | 57 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.86E-27 | 6 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.7E-11 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-11 | 8 | 53 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.75E-11 | 10 | 55 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-17 | 58 | 109 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.237 | 60 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 7.3E-11 | 61 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-11 | 64 | 103 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.17E-9 | 64 | 103 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 237 aa Download sequence Send to blast |
MEEEMIKKGP WKEEEDRVLI EHVRKYGPGH WSSLRSKGLL RRTGKSCRLR WVNKLRPHLK 60 TGEKFTAEEE RRVIELQGQF GNKWARIATY LTGRTDNDVK NFWSSRQKRL TRILHTCSSS 120 SSSTTNQQLE YSPVPHHLPS FPAPNFASPP KQEHNTFQLE YTSQIPSYLN EFERSNGPSP 180 GPTEQPPIMP AFFGQGHNCQ IAPMQEPNGE VDIDFMIDDD FPPIDMFDSF STPDLI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-26 | 6 | 109 | 25 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.N01757.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012831357.1 | 1e-178 | PREDICTED: transcription factor MYB24-like | ||||
TrEMBL | A0A022RPG0 | 1e-177 | A0A022RPG0_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4207 | 23 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G60460.1 | 9e-64 | MYB family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.N01757.1.p |
Entrez Gene | 105952359 |