PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.N01685.2.p | ||||||||
Common Name | LOC105952426, MIMGU_mgv1a006478mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 443aa MW: 49378 Da PI: 5.0787 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.7 | 8.9e-13 | 250 | 296 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + Er RR +N++f+ Lr+l+P++ K + a+i+ A++YI++L Migut.N01685.2.p 250 TKHFATERHRRLLLNDKFQALRKLIPNP-----SKDDRASIVGDAINYINEL 296 78*************************9.....7***************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.202 | 247 | 296 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.47E-14 | 248 | 314 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-10 | 250 | 296 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.93E-9 | 250 | 301 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.7E-13 | 250 | 307 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-9 | 253 | 302 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 443 aa Download sequence Send to blast |
MYEQSSDFDQ TMNLHEQEEG GGLMGQNDVV NYPIISNQEV AAMEMELHHQ LNLEIEHCFN 60 NNNGGQQINN SNNDSSNSWQ LEQMNAAFNL ENQNQDPIFN TAQYPTTTDL LNIFPFPKYP 120 SLLSNSSISF STHNKNSSNN NFLASLGLLG EINPNVGGDG TSASGSVIYD PLLPLNLPPQ 180 PPLLRDLFHS LPNNYTKNGG CSLFGNVDER DNNNNHGNVG LMYQNDNGVF EFTAAGEIDC 240 VGKSRDGKDT KHFATERHRR LLLNDKFQAL RKLIPNPSKD DRASIVGDAI NYINELKRSV 300 AELKLLVEKK RCSRERMKRP KTENENESNS LGNLESGSSL RSSWLQRKSK NTEVDVRIVD 360 DEVTVKLVQQ KRINCLLFVS KVLDELQLDL HHVAGGLIGD YYSFLFNSKI CEGSIVYASA 420 VANKLIEVVD KQYAAIPPSS SY* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.N01685.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012831429.1 | 0.0 | PREDICTED: transcription factor bHLH91-like isoform X1 | ||||
Swissprot | Q8GX46 | 2e-85 | BH091_ARATH; Transcription factor bHLH91 | ||||
TrEMBL | A0A022RQJ5 | 0.0 | A0A022RQJ5_ERYGU; Uncharacterized protein | ||||
STRING | Migut.N01685.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G31210.1 | 1e-68 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.N01685.2.p |
Entrez Gene | 105952426 |
Publications ? help Back to Top | |||
---|---|---|---|
|