PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N01673.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | B3 | ||||||||
Protein Properties | Length: 177aa MW: 19634.5 Da PI: 7.4519 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.3 | 1e-11 | 93 | 147 | 40 | 96 |
ETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 40 desgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 g++W++ + ++ r + Wk Fv +n+Lk+gD +vF+l+++++++ v+kv Migut.N01673.1.p 93 RHGGKTWNMSY--CGDAARPRFDYKWKAFVADNHLKVGDGCVFELMESDSRNAVFKV 147 4579*******..888888888999*******************9987777777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.9E-13 | 54 | 149 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.8E-13 | 56 | 151 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.518 | 58 | 153 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.10E-12 | 83 | 151 | No hit | No description |
Pfam | PF02362 | 1.6E-9 | 92 | 147 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MVSPSNRVAR LATVKMEACT TEHAPGNEEI RRAEFDSSPE AAKADEDEIC YLSGKPYFDI 60 IIGKTHLNRP RGLYPPISMT QRLPRATIPA VLRHGGKTWN MSYCGDAARP RFDYKWKAFV 120 ADNHLKVGDG CVFELMESDS RNAVFKVMIV RGEIPPELQA LIDSRGKSEA VPIVID* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N01673.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012831372.1 | 1e-130 | PREDICTED: B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | A0A022RQD6 | 1e-116 | A0A022RQD6_ERYGU; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1819 | 21 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 1e-08 | related to vernalization1 1 |
Link Out ? help Back to Top | |
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Phytozome | Migut.N01673.1.p |