PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N01672.1.p | ||||||||
Common Name | LOC105952418, MIMGU_mgv1a015135mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | B3 | ||||||||
Protein Properties | Length: 168aa MW: 18644.2 Da PI: 5.2759 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41 | 3.3e-13 | 53 | 138 | 4 | 96 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 vl++s+ l +g l +p + ++ ++++ ++l gr+W++ + ++ r + + Wk Fv +n+Lk+gD +vF+l+++s+++l +kv Migut.N01672.1.p 53 VLSKSHLLPNG-LFVPVTISSTLP---RTTVPVVL-RHGGRTWNMSY--VGNMVRRRFDSQWKTFVADNNLKVGDGCVFELMESSGTNLIFKV 138 55555556555.555666554332...23333444.4588*******..666666668999*********************99999999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.71E-15 | 46 | 134 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-16 | 46 | 142 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.13E-15 | 48 | 142 | No hit | No description |
PROSITE profile | PS50863 | 11.392 | 49 | 144 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.0E-6 | 50 | 144 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-11 | 54 | 138 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MLDNSKQDAV QKKTQAPEHE EIGSTRFDSI SEAAKADEDE ICYLSGKPYF DLVLSKSHLL 60 PNGLFVPVTI SSTLPRTTVP VVLRHGGRTW NMSYVGNMVR RRFDSQWKTF VADNNLKVGD 120 GCVFELMESS GTNLIFKVMI VRGDIPPQLQ ELIDSRGKSD EAPIVLD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N01672.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012831419.1 | 1e-122 | PREDICTED: B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | A0A022RR67 | 1e-121 | A0A022RR67_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1819 | 21 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18000.1 | 2e-07 | VERDANDI |
Link Out ? help Back to Top | |
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Phytozome | Migut.N01672.1.p |
Entrez Gene | 105952418 |