PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N01640.1.p | ||||||||
Common Name | LOC105965576, MIMGU_mgv1a013332mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | LBD | ||||||||
Protein Properties | Length: 224aa MW: 23766.1 Da PI: 6.8884 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.4 | 6.8e-40 | 17 | 117 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkCa++Cv++pyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+a Migut.N01640.1.p 17 PCGACKFLRRKCAAGCVFSPYFESEQgAAHFAAVHKVFGASNVSKLLLHIPVQKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQA 109 7***********************9989***************************************************************** PP DUF260 93 elallkee 100 el++l+++ Migut.N01640.1.p 110 ELSYLQAH 117 ***99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.819 | 16 | 118 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.1E-39 | 17 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MSASNVTGTS AAAAGGPCGA CKFLRRKCAA GCVFSPYFES EQGAAHFAAV HKVFGASNVS 60 KLLLHIPVQK RLDAVVTICY EAQARLRDPV YGCVAHIFAL QQQVVNLQAE LSYLQAHLAA 120 FEIPTPPPAL PPPLTPPPPA LLSISDLPTV SAVPSTYNHD LSSIFDSTLH PTWTMNHQCR 180 ELDTCHFSTA AGAPPEVHSS AVGGLHELDA PPYLQKSRSN FEI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-36 | 13 | 131 | 7 | 127 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-36 | 13 | 131 | 7 | 127 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N01640.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012845593.1 | 1e-163 | PREDICTED: LOB domain-containing protein 18-like | ||||
Swissprot | O81323 | 8e-69 | LBD30_ARATH; LOB domain-containing protein 30 | ||||
TrEMBL | A0A022QVN0 | 1e-162 | A0A022QVN0_ERYGU; Uncharacterized protein | ||||
STRING | Migut.N01640.1.p | 1e-163 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00220.1 | 3e-70 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.N01640.1.p |
Entrez Gene | 105965576 |
Publications ? help Back to Top | |||
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