PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N01603.1.p | ||||||||
Common Name | LOC105967312, MIMGU_mgv1a012967mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | NF-YA | ||||||||
Protein Properties | Length: 235aa MW: 25895.7 Da PI: 9.3523 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 99.2 | 4.1e-31 | 120 | 176 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RR+ Ra+++ ekkl k++kpylheSRhkhA++R+Rg+gGrF Migut.N01603.1.p 120 EEPVYVNAKQYRGILRRREIRARADLEKKL-VKNKKPYLHESRHKHAMKRARGTGGRF 176 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 9.0E-35 | 118 | 179 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.57 | 119 | 179 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 7.0E-27 | 121 | 176 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 7.9E-22 | 122 | 144 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 7.9E-22 | 153 | 176 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MPTLVKSKDR QPYNQPWWHQ EDASVNPVNQ ATNEAISNDT ETTAALLSGV NESNNGKEEQ 60 LLDANSQMEL VGHSIMLTSS YPYPTGPQYG GMLTYGAPVH PHLLGYLPGA RMPLPLEMEE 120 EPVYVNAKQY RGILRRREIR ARADLEKKLV KNKKPYLHES RHKHAMKRAR GTGGRFLNTK 180 KLDENANNST SGDSKSSGSS SITNGNSSSS RQQADVAVYY NNWNEAPPQG PSSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 3e-19 | 120 | 183 | 2 | 65 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 160 | 169 | RHKHAMKRAR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N01603.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012847366.1 | 1e-174 | PREDICTED: nuclear transcription factor Y subunit A-7-like | ||||
Swissprot | Q945M9 | 5e-38 | NFYA9_ARATH; Nuclear transcription factor Y subunit A-9 | ||||
TrEMBL | A0A022QP35 | 1e-172 | A0A022QP35_ERYGU; Uncharacterized protein | ||||
STRING | Migut.N01603.1.p | 1e-173 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11232 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20910.1 | 2e-20 | nuclear factor Y, subunit A9 |
Link Out ? help Back to Top | |
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Phytozome | Migut.N01603.1.p |
Entrez Gene | 105967312 |
Publications ? help Back to Top | |||
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