PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N01595.1.p
Common NameLOC105967294, MIMGU_mgv1a020710mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 338aa    MW: 37958.2 Da    PI: 5.8762
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N01595.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.3e-163683148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g W++eEde+l+++    G g+W+ Iar  g+ R++k+c++rw +yl
  Migut.N01595.1.p 36 KGLWSPEEDEKLIKYMLINGQGCWTEIARNAGLLRCGKSCRLRWINYL 83
                      678*****************************99************97 PP
2Myb_DNA-binding50.83.8e-1689132146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg++++ E++l+v+++  lG++ W+ Ia++++ gRt++++k++w++
  Migut.N01595.1.p  89 RGAFSPHEEQLIVHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 132
                       89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.453183IPR017930Myb domain
SuperFamilySSF466895.43E-2833130IPR009057Homeodomain-like
SMARTSM007171.9E-133585IPR001005SANT/Myb domain
PfamPF002492.5E-143683IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-223790IPR009057Homeodomain-like
CDDcd001678.59E-113983No hitNo description
PROSITE profilePS5129424.71584138IPR017930Myb domain
SMARTSM007172.4E-1588136IPR001005SANT/Myb domain
PfamPF002494.2E-1489132IPR001005SANT/Myb domain
CDDcd001672.31E-1091131No hitNo description
Gene3DG3DSA:1.10.10.602.9E-2591139IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MRKPSAATDH INAINISTKP EKNSSVVVKT TMKLRKGLWS PEEDEKLIKY MLINGQGCWT  60
EIARNAGLLR CGKSCRLRWI NYLRPDLKRG AFSPHEEQLI VHLHSILGNR WSQIAARLPG  120
RTDNEIKNFW NSTIKRRLKK DQCFSTTNNN YGNNNISNTT TTLSSSNYKS DSSSGNNNNI  180
AGLGRAATGF GDTLIFMQEI YDDPVMGGSI TDFRNPNFTN NPTVGDDYNI NNNFEDIFDV  240
QNGLVGLEND VSAPGLEVVM QQQKNYGGCC ELRKSTNYNH VEEELLVNDG INDNWDELGE  300
SSFKMGELLD DYNWEGLLAN LSSSLPNNYH LHLHVDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-28341385108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N01595.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012847349.10.0PREDICTED: transcription factor MYB46
TrEMBLA0A022QRB20.0A0A022QRB2_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.14e-67myb domain protein 83