PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N01433.1.p
Common NameLOC105960543, MIMGU_mgv1a011571mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 278aa    MW: 31384.2 Da    PI: 6.6243
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N01433.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.28.9e-191461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT++Ede+lvd+++ +G g+W++ ++  g+ R++k+c++rw++yl
  Migut.N01433.1.p 14 KGPWTPDEDEKLVDYINNHGHGSWRSLPKLAGLFRCGKSCRLRWNNYL 61
                      79*********************************************7 PP
2Myb_DNA-binding49.69.2e-1667112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg++T +E++l +++++ lG++ W++Ia+ ++ gRt++++k+ w+++l
  Migut.N01433.1.p  67 RGPFTHDEEKLVIQLHAILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 112
                       89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-24565IPR009057Homeodomain-like
PROSITE profilePS5129424.112965IPR017930Myb domain
SuperFamilySSF466892.7E-3011108IPR009057Homeodomain-like
SMARTSM007173.6E-141363IPR001005SANT/Myb domain
PfamPF002496.5E-171461IPR001005SANT/Myb domain
CDDcd001673.62E-111661No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2366116IPR009057Homeodomain-like
PROSITE profilePS5129419.04866116IPR017930Myb domain
SMARTSM007171.2E-1366114IPR001005SANT/Myb domain
PfamPF002498.1E-1567112IPR001005SANT/Myb domain
CDDcd001671.07E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGRAPCCDKK GLKKGPWTPD EDEKLVDYIN NHGHGSWRSL PKLAGLFRCG KSCRLRWNNY  60
LRPDIIRGPF THDEEKLVIQ LHAILGNRWA AIASQLPGRT DNEIKNLWNT HLKKRLLQMG  120
INPQTHEPSS TLSNGLPSTR HMAQWESARL EAEARLSKES RPLINPSPPD GKSDGDYFMR  180
LWNSEVGETF RKVDKKTEYS VSQSPVFSGT TTETGLLTER KNEDFLTGSD SCIDNEMDDS  240
SESSSLQLLL DFPSNNDMSF LGQPDCYYNS LYPSIFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N01433.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC6924607e-87KC692460.1 Mimulus lewisii inbred line LF10 MIXTA-like 7 (MYBML7) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012840186.10.0PREDICTED: myb-related protein Zm38
SwissprotQ9M2D91e-117MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A022R5120.0A0A022R512_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-106myb domain protein 17