PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.N01298.2.p | ||||||||
Common Name | LOC105954616, MIMGU_mgv1a012572mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | BBR-BPC | ||||||||
Protein Properties | Length: 247aa MW: 27889.9 Da PI: 10.0612 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 35.5 | 3.3e-11 | 12 | 90 | 16 | 93 |
GAGA_bind 16 paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla...s 93 ++++++ + ++ + +e++a+++er+ a+se+ka ++e + a +qrd a+ ern+al erdn+++al+++e ++ s Migut.N01298.2.p 12 EQNAFN--TTAKIGILFEEKEAALKERDKAISETKAILKEMEFAITQRDLAIIERNNALKERDNAIAALQFHESNMRnpiS 90 444444..6667777788******************************************************999774432 PP | |||||||
2 | GAGA_bind | 238.7 | 4.2e-73 | 97 | 245 | 150 | 300 |
GAGA_bind 150 kkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidl..vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiS 240 k++++ k + ++ +kk+kk +e+ +++v++ skae++++dl +l+ + +Dest+PvPvCsCtG+ rqCYkWG GGWqS+CCtt++S Migut.N01298.2.p 97 AKASRNVKIKSSRSSKKAKKMGEDLNRQVTTY----GSKAEWEDQDLgsTLQMIRFDESTMPVPVCSCTGVARQCYKWGKGGWQSSCCTTALS 185 22222233333333344455444554444444....499********777******************************************* PP GAGA_bind 241 vyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300 yPLP+++++r+aR++grKmS+ +f++lL +L + G+dls p+DLk +WAkHGtn+++ti Migut.N01298.2.p 186 EYPLPQMPNKRHARMGGRKMSGTVFSRLLTRLGTAGHDLSVPLDLKIYWAKHGTNRYITI 245 ***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 8.2E-86 | 5 | 246 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 2.2E-70 | 98 | 245 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0050793 | Biological Process | regulation of developmental process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 247 aa Download sequence Send to blast |
MWNMMQYQHF SEQNAFNTTA KIGILFEEKE AALKERDKAI SETKAILKEM EFAITQRDLA 60 IIERNNALKE RDNAIAALQF HESNMRNPIS EVPTSRAKAS RNVKIKSSRS SKKAKKMGED 120 LNRQVTTYGS KAEWEDQDLG STLQMIRFDE STMPVPVCSC TGVARQCYKW GKGGWQSSCC 180 TTALSEYPLP QMPNKRHARM GGRKMSGTVF SRLLTRLGTA GHDLSVPLDL KIYWAKHGTN 240 RYITIT* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.N01298.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012833734.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE4 | ||||
Swissprot | Q8S8C6 | 6e-92 | BPC4_ARATH; Protein BASIC PENTACYSTEINE4 | ||||
TrEMBL | A0A022RL12 | 0.0 | A0A022RL12_ERYGU; Uncharacterized protein | ||||
STRING | Migut.N01298.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G21240.2 | 2e-90 | basic pentacysteine 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.N01298.2.p |
Entrez Gene | 105954616 |