PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N01120.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 241aa MW: 26406.8 Da PI: 8.0994 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.4 | 5.9e-21 | 24 | 72 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ien snrqvtfskRr g++KKA+EL++L +a++a+i+ s +++ + Migut.N01120.1.p 24 KKIENLSNRQVTFSKRRVGLFKKASELCILSGAQIAIIVHSLGKRVFSF 72 68*************************************9977776655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.292 | 16 | 76 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.2E-29 | 16 | 75 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.55E-31 | 17 | 85 | No hit | No description |
SuperFamily | SSF55455 | 1.7E-24 | 17 | 86 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-18 | 18 | 38 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.3E-20 | 25 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-18 | 38 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-18 | 53 | 74 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MVMLRENGST VKKTTQGRKK IEIKKIENLS NRQVTFSKRR VGLFKKASEL CILSGAQIAI 60 IVHSLGKRVF SFGHPTADSV VDRYLGGGGG GREAHLEAAK TRDYNKHYSD VCKKLEVEKK 120 RREAIEEAKR VEGYAAAASG LWWDDADVEG MDLDELVQYA EALEELMKNV TMRANDFMLM 180 RNSNSLRPVA AAGANSMDIA AAAAYSVDDT TAFGNQSHLS GGFDYHDNCG IHHGFGQGQF 240 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N01120.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012835329.1 | 1e-180 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A022RFX2 | 1e-158 | A0A022RFX2_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2134 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-36 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Migut.N01120.1.p |