PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N01113.1.p | ||||||||
Common Name | MIMGU_mgv1a013585mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | bHLH | ||||||||
Protein Properties | Length: 217aa MW: 24257.2 Da PI: 9.9164 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.7 | 3.8e-12 | 40 | 87 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ ++f L l+P + kK++Ka++L A +Y+k+Lq Migut.N01113.1.p 40 QEHVLAERKRREKLSQRFIALSALVPAL-----KKMDKATVLGDAAKYMKQLQ 87 67999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.453 | 37 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-16 | 40 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-10 | 40 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.1E-17 | 41 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.95E-11 | 42 | 91 | No hit | No description |
SMART | SM00353 | 6.2E-14 | 43 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MEISSLAESS SSSSGILDDS LFQQWPVNPK RITTSNSQAQ EHVLAERKRR EKLSQRFIAL 60 SALVPALKKM DKATVLGDAA KYMKQLQDKV KILEEQSKKT SIPSVNESLV FVKKHEQNSS 120 SSSSDESFPE IKARLCNKEV LITIHCVKRK GVVEKAVSMI EKLHLSAINT SVMSFGDSAL 180 SITVHAQVII LINFFFHTNH IINFYLFFIF LFLLLG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-13 | 42 | 90 | 9 | 57 | Transcription factor MYC2 |
5gnj_B | 1e-13 | 42 | 90 | 9 | 57 | Transcription factor MYC2 |
5gnj_E | 1e-13 | 42 | 90 | 9 | 57 | Transcription factor MYC2 |
5gnj_F | 1e-13 | 42 | 90 | 9 | 57 | Transcription factor MYC2 |
5gnj_G | 1e-13 | 42 | 90 | 9 | 57 | Transcription factor MYC2 |
5gnj_I | 1e-13 | 42 | 90 | 9 | 57 | Transcription factor MYC2 |
5gnj_M | 1e-13 | 42 | 90 | 9 | 57 | Transcription factor MYC2 |
5gnj_N | 1e-13 | 42 | 90 | 9 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 45 | 50 | ERKRRE |
2 | 46 | 51 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N01113.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012835374.1 | 1e-132 | PREDICTED: transcription factor bHLH18-like | ||||
Swissprot | Q9T072 | 1e-40 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | A0A022RGG0 | 1e-154 | A0A022RGG0_ERYGU; Uncharacterized protein | ||||
STRING | Migut.N01113.1.p | 1e-155 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1760 | 24 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 3e-40 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.N01113.1.p |