PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N00977.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB_related | ||||||||
Protein Properties | Length: 312aa MW: 35424.9 Da PI: 5.1771 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.9 | 4.7e-13 | 26 | 69 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg + +E+ l+++++++lG++ W+ Ia+ ++ gRt++++k+ w++ Migut.N00977.1.p 26 RGTISLDEENLIIELHALLGNR-WSQIAAQLP-GRTDNEIKNLWNS 69 677899****************.*********.*********9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.426 | 1 | 20 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-5 | 4 | 19 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.7E-19 | 6 | 79 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-23 | 20 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.442 | 21 | 75 | IPR017930 | Myb domain |
SMART | SM00717 | 5.3E-12 | 25 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-12 | 26 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.09E-8 | 30 | 71 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MKLGLQRCGK SCRLRWINYL RPDLKRGTIS LDEENLIIEL HALLGNRWSQ IAAQLPGRTD 60 NEIKNLWNSS LKKKLRSKGI DPNTHKPLSE ILLIDNDEKS SQEITTTADE KPPSNILLPY 120 INNNNNSNND DNGIFGLNNN NNRFVVSSHS DNFPGFLSYE NILSTNPDSS IFFNVVSNSN 180 NSNISSNTSN NNNTNNNNNP ASPFSMKFDQ RWDSCKISDD QFSRTNGSFF EKEDYDQSHH 240 TNNNISTSGG EIISELYMQQ TPFLLGNYEA QFANEGSLLM SQQQQLEQQS LLQDEEIYSK 300 LHFQRLFGHF S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-20 | 7 | 75 | 40 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 70 | 76 | LKKKLRS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N00977.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR780080 | 3e-71 | KR780080.1 Rehmannia glutinosa R2R3-MYB protein (MYB4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012839817.1 | 0.0 | PREDICTED: transcription factor MYB86-like | ||||
TrEMBL | A0A022R6R0 | 0.0 | A0A022R6R0_ERYGU; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01680.3 | 5e-40 | myb domain protein 55 |
Link Out ? help Back to Top | |
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Phytozome | Migut.N00977.1.p |