PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.N00836.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

bZIP

Protein Properties

Length: 344aa MW: 38976.2 Da PI: 9.3249

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.N00836.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	22.4	2.7e-07	211	257	17	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 A+rsR RK+++i+eLe+ v +L+a+ ++ ele l+++ l +e+ Migut.N00836.1.p 211 AQRSRVRKLQYIAELERNVYALQAQGSEVSAELEFLNQQNLILNMEN 257 89************************************998888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.003	200	259	IPR004827	Basic-leucine zipper domain
CDD	cd14703	3.90E-15	202	250	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.1E-5	211	253	No hit	No description
SuperFamily	SSF57959	3.0E-5	211	253	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MANSKGASTI GSMTYHGKNS LLPPKIPFPS ISPSYTEYIP SSAIAPKSLP KPRDGNSHHQ 60 RTSSESFLIE EQPSWLDDLL NEPDTPVRKG GHRRSSSDSF AYNDTNKIAS MNYAAQDDNN 120 KFKNISPSLS WGSQDFNIYS DMHHSAFYAD PNPCGKNKNK PWVTPPTLSA EKKDVESGQQ 180 DPKGCFGKKE PFHLRSSASE TDTKRAKQQF AQRSRVRKLQ YIAELERNVY ALQAQGSEVS 240 AELEFLNQQN LILNMENKTL KQRLESLTQE QLIKYLEQDV LEREAGRLRS LYQQQNMQQP 300 QQQQISSSVH RRAKSRDFDQ QFANLSLKHK ETNPSHDSFS SHI*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MANSKGASTI GSMTYHGKNS LLPPKIPFPS ISPSYTEYIP SSAIAPKSLP KPRDGNSHHQ  60
RTSSESFLIE EQPSWLDDLL NEPDTPVRKG GHRRSSSDSF AYNDTNKIAS MNYAAQDDNN  120
KFKNISPSLS WGSQDFNIYS DMHHSAFYAD PNPCGKNKNK PWVTPPTLSA EKKDVESGQQ  180
DPKGCFGKKE PFHLRSSASE TDTKRAKQQF AQRSRVRKLQ YIAELERNVY ALQAQGSEVS  240
AELEFLNQQN LILNMENKTL KQRLESLTQE QLIKYLEQDV LEREAGRLRS LYQQQNMQQP  300
QQQQISSSVH RRAKSRDFDQ QFANLSLKHK ETNPSHDSFS SHI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.N00836.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012849877.1	0.0	PREDICTED: uncharacterized protein At4g06598
Swissprot	Q8W3M7	5e-53	Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBL	A0A022QG94	0.0	A0A022QG94_ERYGU; Uncharacterized protein
STRING	Migut.N00836.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2765	17	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.2	1e-84	bZIP family protein

Link Out ? help Back to Top
Phytozome	Migut.N00836.1.p

Publications ? help Back to Top
Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4. DNA Res., 2001. 8(6): p. 285-90 [PMID:11853315]