PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N00674.1.p | ||||||||
Common Name | LOC105954404, MIMGU_mgv1a013594mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | FAR1 | ||||||||
Protein Properties | Length: 217aa MW: 25227.8 Da PI: 10.1609 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 98.1 | 9.6e-31 | 45 | 132 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA+++GF++r+++ ++s r+g +++r++vC+keg+r+++ k+ +++r++ra tr gCka+++vkkek+gkw+vtk+ +eHnH+l+ Migut.N00674.1.p 45 FYDAYATHMGFTMRVDAFRRSMRDGGVVWRRLVCNKEGFRKSRPKR-SENRKPRAITREGCKAMMVVKKEKTGKWVVTKFFKEHNHPLV 132 9*******************************************99.9***************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-28 | 45 | 132 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MDDNEAEMLG ISMVNDFLVN NNEGNSDREP YVDMEFDSEE AAKVFYDAYA THMGFTMRVD 60 AFRRSMRDGG VVWRRLVCNK EGFRKSRPKR SENRKPRAIT REGCKAMMVV KKEKTGKWVV 120 TKFFKEHNHP LVFAPVNARR SAQLSQTPDE KDMKIRELTA ELQRERKRSS ALQQQLNSIL 180 KDMDEHFKHL SRNITNIVES VNEIESRRPI TAIRKS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N00674.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012833526.1 | 1e-161 | PREDICTED: protein FAR1-RELATED SEQUENCE 12 | ||||
TrEMBL | A0A022RP09 | 1e-160 | A0A022RP09_ERYGU; Uncharacterized protein | ||||
STRING | Migut.N00674.1.p | 1e-161 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12791 | 15 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 2e-88 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.N00674.1.p |
Entrez Gene | 105954404 |