PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N00673.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | FAR1 | ||||||||
Protein Properties | Length: 243aa MW: 27594 Da PI: 5.1603 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 86.7 | 3.5e-27 | 74 | 163 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA++vGF vr+ + ++s+ +g++ r++ C+k+g++ ++k k e++ ra+ r gCka++ k+ek+gkw+vt+++++HnH+l+ Migut.N00673.1.p 74 RFYNDYARRVGFVVRIMQRRRSEIDGRTLARRLGCNKQGFSPNNKGKIGPEKKLRASAREGCKATILFKMEKSGKWVVTRFVKDHNHPLV 163 5***************************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.8E-25 | 74 | 163 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MHEVNFKGIF FLYQLAVVEG NTGAESERDD WNSNDSEEDD VIEIEENNTR SVEGGEVLEP 60 YVGMEFESEE DARRFYNDYA RRVGFVVRIM QRRRSEIDGR TLARRLGCNK QGFSPNNKGK 120 IGPEKKLRAS AREGCKATIL FKMEKSGKWV VTRFVKDHNH PLVVTAQEFT NVSDKDKKIQ 180 ELARELQRQE ELCASYREKL ISLLANVENQ TENLSSKVLA VIDNVRKAEA EALSEALALS 240 VT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N00673.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012833525.1 | 1e-164 | PREDICTED: protein FAR1-RELATED SEQUENCE 12 | ||||
TrEMBL | A0A022RKY6 | 1e-163 | A0A022RKY6_ERYGU; Uncharacterized protein | ||||
STRING | Migut.N00673.1.p | 1e-178 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11602 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12850.1 | 3e-63 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.N00673.1.p |