PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N00586.1.p
Common NameMIMGU_mgv1a004375mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family AP2
Protein Properties Length: 531aa    MW: 58391.7 Da    PI: 6.5952
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N00586.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.44.2e-14238297155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  Migut.N00586.1.p 238 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWG 297
                       57*******************666664478446**********99*************98 PP
2AP250.16.9e-16340391155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Migut.N00586.1.p 340 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 391
                       57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.89E-17238307IPR016177DNA-binding domain
CDDcd000186.18E-22238307No hitNo description
PfamPF008475.0E-11238297IPR001471AP2/ERF domain
PROSITE profilePS5103219.032239305IPR001471AP2/ERF domain
SMARTSM003804.4E-27239311IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-15239306IPR001471AP2/ERF domain
PRINTSPR003673.6E-6240251IPR001471AP2/ERF domain
CDDcd000181.84E-11340399No hitNo description
SuperFamilySSF541717.85E-18340400IPR016177DNA-binding domain
PfamPF008473.0E-10340391IPR001471AP2/ERF domain
SMARTSM003807.3E-31341405IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-18341399IPR001471AP2/ERF domain
PROSITE profilePS5103219.177341399IPR001471AP2/ERF domain
PRINTSPR003673.6E-6381401IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MAPDNNNNNW LSFSLSSMEM LNSSSSSSSQ QQPPVNNDSD QHQFYSSFAD NFYANGWPMI  60
QKAQDMYAEN QHLQEHGGGG GGGGSVFATA AYMQPPKLED FFAGGGDSTE TQDDSSLTHI  120
YDHHNHHHHH AAAYFSSNEH QDLKSTTYTG FQAFSANSGS EVDDSAFGGQ TQSSPIESPG  180
GDLVVYSHCP VAADAINNNA LSLGVNYNNN NKKAGAAIVA AESEGCKKIA DTFGQRTSIY  240
RGVTRHRWTG RYEAHLWDNS CRREGQARKG RQVYLGGYDK EDKAARAYDL AALKYWGATA  300
TTNFPISNYT KELEEMQHAT KQEFIASLRR KSSGFSRGAS IYRGVTRHHQ QGRWQARIGR  360
VAGNKDLYLG TFATEEEAAE AYDIAAIKFR GLNAVTNFEM NRYDVEAIAK SPLPVGGAAK  420
RLKLSLESND MDDNLNHPSS TAAATQTTTN ISFSTTVQHP GSALYPYGVP FDTTTAAGAP  480
FYHHNLFQHN MNHHQHHVGP TEAASTQPPM NHMMMQSPQE FFIWPHQSYN *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N00586.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012844257.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-147AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A022QWJ50.0A0A022QWJ5_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65510.11e-133AINTEGUMENTA-like 7
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]