PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.N00424.1.p

Common Name

LOC105963147, MIMGU_mgv1a006911mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

HSF

Protein Properties

Length: 427aa MW: 47666.9 Da PI: 5.4949

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.N00424.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	110.3	1.4e-34	18	108	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl k+ye+++d +++ ++sws++ +sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F+k++k+ll Migut.N00424.1.p 18 FLLKTYEMVDDTATDAIVSWSASRKSFVVWNPPEFARVLLPSYFKHNNFSSFIRQLNTYGFRKIDPEK---------WEFANEDFTKDQKHLL 101 9******************999*************************************999.........************ PP XXXXXXX CS HSF_DNA-bind 95 ekikrkk 101 ++i+r+k Migut.N00424.1.p 102 KNIHRRK 108 ***98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	2.45E-34	14	107	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	5.8E-60	14	107	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.2E-37	14	107	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	9.4E-19	18	41	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.4E-30	18	107	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.4E-19	56	68	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	57	81	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.4E-19	69	81	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MDGGAPGGGG GGGGPAPFLL KTYEMVDDTA TDAIVSWSAS RKSFVVWNPP EFARVLLPSY 60 FKHNNFSSFI RQLNTYGFRK IDPEKWEFAN EDFTKDQKHL LKNIHRRKPI HSHSQPQGSV 120 DSERASFEEE IDKLSRDKSV LEGKLSGYKE QQSAAKSQLE TLTPRIVSME QRQEKLLSFL 180 EKAVQNPDFV DRLTQKLESM DFSVYNKKRR LPQSDHVQSI QDNLLLDDQL GSICDQDLCN 240 ELRLELSTAV SDVNLLSHST QSSNEGLSKD VHVRTSSGFL CPPETLELSD TGASFKLGPE 300 SPKRQSLQDE GDVHLSCLLN LTLASSSSPL ELDKNREICT RSDNEVVHTQ TVASSHDVNN 360 SKQGGSNGQN RVNDVFWEQF LTERPGCSDT EEGSSGFRAK PYEEQEERRS VKGIARNTKG 420 MEHLTL*

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MDGGAPGGGG GGGGPAPFLL KTYEMVDDTA TDAIVSWSAS RKSFVVWNPP EFARVLLPSY  60
FKHNNFSSFI RQLNTYGFRK IDPEKWEFAN EDFTKDQKHL LKNIHRRKPI HSHSQPQGSV  120
DSERASFEEE IDKLSRDKSV LEGKLSGYKE QQSAAKSQLE TLTPRIVSME QRQEKLLSFL  180
EKAVQNPDFV DRLTQKLESM DFSVYNKKRR LPQSDHVQSI QDNLLLDDQL GSICDQDLCN  240
ELRLELSTAV SDVNLLSHST QSSNEGLSKD VHVRTSSGFL CPPETLELSD TGASFKLGPE  300
SPKRQSLQDE GDVHLSCLLN LTLASSSSPL ELDKNREICT RSDNEVVHTQ TVASSHDVNN  360
SKQGGSNGQN RVNDVFWEQF LTERPGCSDT EEGSSGFRAK PYEEQEERRS VKGIARNTKG  420
MEHLTL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	6e-22	5	107	17	129	Heat shock factor protein 1
5d5v_B	6e-22	5	107	17	129	Heat shock factor protein 1
5d5v_D	6e-22	5	107	17	129	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.N00424.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC182560	0.0	AC182560.2 Erythranthe guttata clone MGBa-24L12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012842978.1	0.0	PREDICTED: heat stress transcription factor A-5
Swissprot	Q94BZ5	1e-140	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A022QZF3	0.0	A0A022QZF3_ERYGU; Uncharacterized protein
STRING	Migut.N00424.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9461	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-139	HSF family protein

Link Out ? help Back to Top
Phytozome	Migut.N00424.1.p
Entrez Gene	105963147

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]