PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N00388.1.p | ||||||||
Common Name | LOC105963117, MIMGU_mgv1a017674mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | ERF | ||||||||
Protein Properties | Length: 400aa MW: 44720.5 Da PI: 8.4394 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.2 | 4e-18 | 234 | 282 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+WvAeIr p++ r+r++lg+f taeeAa a++ a+ l+g Migut.N00388.1.p 234 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFETAEEAAFAYDTAAYILRG 282 8******9.**********955...5**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.62E-30 | 232 | 291 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.3E-31 | 233 | 292 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.049 | 233 | 290 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.99E-22 | 233 | 291 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.0E-32 | 233 | 296 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.6E-11 | 234 | 281 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-10 | 234 | 245 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-10 | 256 | 272 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MENIFPKMEA FMHKAELDHP NIFYVPKPEP LLEKRPISSS ESTAKEVCCN SDTTLNIQLS 60 EFSKEAILRK FHAHSSCFNG YAAINPPRYY YQSESSSSGC NYVGGGNYDN TPMMSFLDQS 120 FPSSTYEPCS PISLSKSPNL GLFLHDPILI QKSAQQNPLF TNMPQLDQTQ LEFSGSPSSS 180 SSNWLKINQN LTNSKGFNDY WLSTTKTQPM KSRSRIEKSA LLPSSSSSPQ GKLFRGVRQR 240 HWGKWVAEIR LPRNRTRVWL GTFETAEEAA FAYDTAAYIL RGDFAHLNFP DMKHRIKSNN 300 SMSNSTVALL EAKLQAISKG VSNNPKKGTI NKDGNAILLS SSDQEKFEEK SLSRKAEAVE 360 IKKSSSEVGM MNLISDVDAV QLSRFPSLDM DMIWDSLLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-21 | 230 | 290 | 2 | 63 | ATERF1 |
3gcc_A | 7e-21 | 230 | 290 | 2 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N00388.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012842942.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF062 | ||||
Swissprot | Q9SVQ0 | 7e-72 | ERF62_ARATH; Ethylene-responsive transcription factor ERF062 | ||||
TrEMBL | A0A022QYL6 | 0.0 | A0A022QYL6_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10921 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13620.1 | 9e-59 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.N00388.1.p |
Entrez Gene | 105963117 |