PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N00319.1.p | ||||||||
Common Name | MIMGU_mgv1a019305mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB | ||||||||
Protein Properties | Length: 249aa MW: 28890.1 Da PI: 8.9762 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.2 | 2.2e-19 | 12 | 59 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll+++v+++G g+W+ +ar g++R +k+c++rw +yl Migut.N00319.1.p 12 KGPWTAEEDKLLIQYVNLHGEGRWNNVARLAGLKRNGKSCRLRWVNYL 59 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.5e-16 | 65 | 109 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ Migut.N00319.1.p 65 RGQITPHEEMIILELHAKWGNR-WSTIARSLP-GRTDNEIKNYWRTH 109 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.834 | 7 | 59 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.31E-31 | 9 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-17 | 11 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-18 | 12 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-24 | 13 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.69E-13 | 14 | 59 | No hit | No description |
PROSITE profile | PS51294 | 24.238 | 60 | 114 | IPR017930 | Myb domain |
SMART | SM00717 | 3.7E-15 | 64 | 112 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-14 | 65 | 109 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-24 | 67 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.71E-11 | 69 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MGWGVIEQGW RKGPWTAEED KLLIQYVNLH GEGRWNNVAR LAGLKRNGKS CRLRWVNYLR 60 PDLKRGQITP HEEMIILELH AKWGNRWSTI ARSLPGRTDN EIKNYWRTHF KKKATQSSPD 120 TPEKTRAKLL RRQQFQQQRD HQITGTAAKI VSFNTDGSEN RSVTSFGQVR QENAYPSAFD 180 HDQELLYSMI NDYASCVSTH DQVSNNQDTI IWDNGFWNLD DEEYLLHGNF TGSANINNYQ 240 HNFATAFY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-26 | 12 | 114 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N00319.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012843202.1 | 0.0 | PREDICTED: transcription factor MYB21-like | ||||
TrEMBL | A0A022QXJ4 | 0.0 | A0A022QXJ4_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 7e-77 | myb domain protein 305 |
Link Out ? help Back to Top | |
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Phytozome | Migut.N00319.1.p |