PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.N00259.1.p | ||||||||
Common Name | LOC105963039, MIMGU_mgv1a012843mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 239aa MW: 26866.4 Da PI: 4.7494 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30 | 9.3e-10 | 88 | 134 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rEr RR+++N++f+eL ++l + + K +K +iL A++ +++L Migut.N00259.1.p 88 KACRERMRREKLNERFSELSSVLEPG---RPIKSDKLAILGDAIRVLNQL 134 568**********************7...7899**************999 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.5 | 83 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-12 | 84 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.00E-8 | 87 | 137 | No hit | No description |
Pfam | PF00010 | 2.5E-7 | 88 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-9 | 89 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.8E-11 | 91 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 239 aa Download sequence Send to blast |
MNDYSNNQLD SFDDCWTDLI DCSSLLDDGV PAAADLYWNP QPPIQNGGVT IDASLSGIIS 60 QVSECAEEQE CRRKRGRSSG QCGVTGNKAC RERMRREKLN ERFSELSSVL EPGRPIKSDK 120 LAILGDAIRV LNQLKTESDE YKEMNEKLLE EIKTLKAEKI ELRDEKMVLK TDKERMEQQL 180 KTMAVPQTGF MPAHPSMYQA GPNKMPMYPN FGLVPMWQYL PPAGRDTSQD PEPFSRAA* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.N00259.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012842849.1 | 1e-178 | PREDICTED: transcription factor bHLH104 | ||||
Swissprot | Q8L467 | 4e-62 | BH104_ARATH; Transcription factor bHLH104 | ||||
TrEMBL | A0A022R167 | 1e-177 | A0A022R167_ERYGU; Uncharacterized protein | ||||
STRING | Migut.N00259.1.p | 1e-178 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4762 | 21 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G14410.2 | 1e-64 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.N00259.1.p |
Entrez Gene | 105963039 |