PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N00133.1.p
Common NameLOC105961444, MIMGU_mgv1a001618mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family SBP
Protein Properties Length: 785aa    MW: 87896.3 Da    PI: 6.3722
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N00133.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP116.21.7e-36139215177
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                       +Cqv++Cead+se+k yhrrh+vC +++++++v+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k 
  Migut.N00133.1.p 139 RCQVPDCEADISELKGYHRRHRVCLKCANSSMVVLDGESKRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKP 215
                       6***********************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.5E-28135201IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.368137214IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.22E-33138217IPR004333Transcription factor, SBP-box
PfamPF031104.5E-27140214IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 785 aa     Download sequence    Send to blast
MQHNPPTPPS QFSISEAAAA AAAAPPPPQI PADEPTFSSL FDWSDFLDFN IDETLTAPIP  60
HPELEPPPID QSQPSDSSGP DKSERIRKRD PRLTCSNFLA GIVPCACPEL DALLAEEEAV  120
LPGKKRTRTA RNPGLNPTRC QVPDCEADIS ELKGYHRRHR VCLKCANSSM VVLDGESKRY  180
CQQCGKFHIL SDFDEGKRSC RRKLERHNNR RRRKPNDSKE GTEKESQQIL LADDVSGDDD  240
TAKDGICVSS QIEEREILPE SNAHVSTVGS GLDSQNLQSD SVASFSTPAD THIEGDKDKQ  300
NPKYKLSPSY CDNKTNFSSL CPSGRISFKL YDWNPAEFPR RLRHQIFEWL ANMPVELEGY  360
IRPGCTILTA FIAMPKPEWL KLLEEPALCL KDLVASPGSM LSGRDTMHVY LNDMIFRVTK  420
DANSVVKVKV KSQAPKLHYI YPTCFEAGRP MEFVACGSFL LQPNFRFLIS FAGRYLAYSF  480
SISPPNCEKD AKGTNYQMLK IRVPEIDVAL FGPAFIEVEN ESGLSNFIPI LVGDKETCEE  540
MSILQQKFDT KREISHPQLA CQDFALRQDQ FSEFLLDVAW LLKKPVSDQQ LTSSHIQRFN  600
HVFDFLIEKE SSIILQRVYS SVRSALDNDL APCISDSEMS SLQKNMEIAQ RRLSHNLLEK  660
KFSTMPNSES TSQIDDIYVA PATNMGVQRM VKNMMGMKVP TSPSIEEGAT VPLLKREVIM  720
TVDLQERPMK PGHGFLTRRF LTSRSLIVAV MAVAICFGVC SVVLHPQKVD RIATTIRSCL  780
FDNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A8e-46139217583squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200212RRKLERHNNRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N00133.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012841134.10.0PREDICTED: squamosa promoter-binding-like protein 7 isoform X1
TrEMBLA0A022RZV00.0A0A022RZV0_ERYGU; Uncharacterized protein
STRINGMigut.N00133.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54072433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.10.0squamosa promoter binding protein-like 7