PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N00059.2.p
Common NameMIMGU_mgv1a023212mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ARR-B
Protein Properties Length: 447aa    MW: 50669.2 Da    PI: 5.4464
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N00059.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.81.1e-27136189155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       kpr+ W+++LHe+F++av+q+ Gs+kA+Pk+ile+m+v+gLt+e+v+SHLQkYRl
  Migut.N00059.2.p 136 KPRVMWSKKLHEQFISAVNQI-GSDKAVPKKILEVMNVPGLTRENVASHLQKYRL 189
                       79*******************.********************************8 PP
2Response_reg31.41e-1115653109
                       CTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
      Response_reg  53 mpgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                       mp+mdG++ll++   e  +lp+i+++a ++++++ + ++ Ga d+l Kp+++e+l +
  Migut.N00059.2.p   1 MPDMDGFKLLEHVGLEM-DLPVIMMSADDSKKLVMKGVNHGACDYLIKPVSMEALKN 56 
                       9************6644.8**********************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.13E-16176IPR011006CheY-like superfamily
PfamPF000727.1E-9156IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011024.193162IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.18E-12161No hitNo description
Gene3DG3DSA:3.40.50.23003.7E-21185No hitNo description
PROSITE profilePS5129410.429133192IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-28134194IPR009057Homeodomain-like
SuperFamilySSF466891.34E-19134193IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-24136189IPR006447Myb domain, plants
PfamPF002496.8E-8139188IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MPDMDGFKLL EHVGLEMDLP VIMMSADDSK KLVMKGVNHG ACDYLIKPVS MEALKNIWQH  60
VVHRKKHEWA RKNIQQSRTA AEEDVEELHQ KQPSNEEVGY YSSSSANNEG SLRSSNERKD  120
EEDECEERDC KSKPKKPRVM WSKKLHEQFI SAVNQIGSDK AVPKKILEVM NVPGLTRENV  180
ASHLQKYRLC LRKMSGEIQN GLGHSFVSST DSTFGPLTFA SSSQPRQQSL APVSASLNVH  240
QRNIFTYENP TTRFVQGQQR HFNSDNEVNF LRGIPTYRNL TNIPFGNMNN RRDSNSLLTE  300
MVQTQQRSQI SNNGIGCNNL SNHSFSAPTL FSGIASVTSL PHNLEPETNA SRGFVPSFDV  360
FEDLNQNRTD EWDLQIVEPG FQSVNNSNIG QQQNILSPAD NLFSFQNSLF TEHDEFMNTY  420
LDQNQQDVLS ESEFDFNEYQ LDSLPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-20135195464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N00059.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012840536.10.0PREDICTED: two-component response regulator ARR2-like isoform X2
SwissprotQ9ZWJ91e-90ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A022RZU50.0A0A022RZU5_ERYGU; Uncharacterized protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-86response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]